Results 1 - 20 of 29 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18499 | 3' | -57.1 | NC_004681.1 | + | 1867 | 0.76 | 0.217259 |
Target: 5'- uGAGGagGGCgaugGCCUGGGGAACUACCu -3' miRNA: 3'- -CUCUggCCGa---UGGACCUCUUGGUGGc -5' |
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18499 | 3' | -57.1 | NC_004681.1 | + | 3083 | 0.69 | 0.530709 |
Target: 5'- cGGGuACCGGCUGCCUcGAuGGCCGCg- -3' miRNA: 3'- -CUC-UGGCCGAUGGAcCUcUUGGUGgc -5' |
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18499 | 3' | -57.1 | NC_004681.1 | + | 5071 | 0.71 | 0.423293 |
Target: 5'- uGGAauUCGGCgaugugcGCgUGGAGAACCACCa -3' miRNA: 3'- cUCU--GGCCGa------UGgACCUCUUGGUGGc -5' |
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18499 | 3' | -57.1 | NC_004681.1 | + | 7551 | 0.66 | 0.699278 |
Target: 5'- cGGGACUGucguCUACacggUGGAGGACgGCCGg -3' miRNA: 3'- -CUCUGGCc---GAUGg---ACCUCUUGgUGGC- -5' |
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18499 | 3' | -57.1 | NC_004681.1 | + | 7890 | 0.67 | 0.63585 |
Target: 5'- uGAGACCGccGCcGCCUccGAGGaaGCCGCCGa -3' miRNA: 3'- -CUCUGGC--CGaUGGAc-CUCU--UGGUGGC- -5' |
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18499 | 3' | -57.1 | NC_004681.1 | + | 12420 | 0.76 | 0.211775 |
Target: 5'- cGAGACCGGCU-CCUGGAGcACgaugguCACCu -3' miRNA: 3'- -CUCUGGCCGAuGGACCUCuUG------GUGGc -5' |
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18499 | 3' | -57.1 | NC_004681.1 | + | 17855 | 0.66 | 0.678273 |
Target: 5'- cGGGcgccCCGGCguucACuCUGGAGGACCuCCa -3' miRNA: 3'- -CUCu---GGCCGa---UG-GACCUCUUGGuGGc -5' |
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18499 | 3' | -57.1 | NC_004681.1 | + | 17952 | 0.66 | 0.720038 |
Target: 5'- cGAGGgCGGCU-CCgu--GGGCCACCGc -3' miRNA: 3'- -CUCUgGCCGAuGGaccuCUUGGUGGC- -5' |
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18499 | 3' | -57.1 | NC_004681.1 | + | 24289 | 0.68 | 0.603966 |
Target: 5'- -uGAUCGGCUugUUGGuGcGCaCGCCGa -3' miRNA: 3'- cuCUGGCCGAugGACCuCuUG-GUGGC- -5' |
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18499 | 3' | -57.1 | NC_004681.1 | + | 24453 | 0.66 | 0.692998 |
Target: 5'- -uGACCGGCUguccggcaacgaggcGCCgGGAGAGuuCCAgCGc -3' miRNA: 3'- cuCUGGCCGA---------------UGGaCCUCUU--GGUgGC- -5' |
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18499 | 3' | -57.1 | NC_004681.1 | + | 27735 | 0.68 | 0.603966 |
Target: 5'- uGGAUCGGCgACC---AGAGCCGCCGc -3' miRNA: 3'- cUCUGGCCGaUGGaccUCUUGGUGGC- -5' |
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18499 | 3' | -57.1 | NC_004681.1 | + | 28698 | 0.66 | 0.709693 |
Target: 5'- aAGGCUGGCUuagGCUUGGucgucACCACUGg -3' miRNA: 3'- cUCUGGCCGA---UGGACCucu--UGGUGGC- -5' |
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18499 | 3' | -57.1 | NC_004681.1 | + | 32326 | 0.66 | 0.68775 |
Target: 5'- cGAGGCCGcGCUGCCgcugcgaUGGccuGcuCCACCa -3' miRNA: 3'- -CUCUGGC-CGAUGG-------ACCu--CuuGGUGGc -5' |
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18499 | 3' | -57.1 | NC_004681.1 | + | 35446 | 0.67 | 0.657105 |
Target: 5'- uGAGGCCGcCUGggcUUUGGAGAACUACuCGa -3' miRNA: 3'- -CUCUGGCcGAU---GGACCUCUUGGUG-GC- -5' |
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18499 | 3' | -57.1 | NC_004681.1 | + | 37177 | 0.71 | 0.405178 |
Target: 5'- uGGAUCGGCUgguucugagGCCgcugGGAuGAGCCACCc -3' miRNA: 3'- cUCUGGCCGA---------UGGa---CCU-CUUGGUGGc -5' |
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18499 | 3' | -57.1 | NC_004681.1 | + | 38818 | 0.71 | 0.399839 |
Target: 5'- cGAGACCauccgggccuacggcGGCaGCgUGGAGGGCUACCu -3' miRNA: 3'- -CUCUGG---------------CCGaUGgACCUCUUGGUGGc -5' |
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18499 | 3' | -57.1 | NC_004681.1 | + | 38876 | 0.66 | 0.709693 |
Target: 5'- gGAGAgCUGGCgccaCUGGAGAagGCCAgCCu -3' miRNA: 3'- -CUCU-GGCCGaug-GACCUCU--UGGU-GGc -5' |
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18499 | 3' | -57.1 | NC_004681.1 | + | 39165 | 0.7 | 0.4804 |
Target: 5'- cGAGACCGGCauccggGCCgcGGAGAugCucGCCc -3' miRNA: 3'- -CUCUGGCCGa-----UGGa-CCUCUugG--UGGc -5' |
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18499 | 3' | -57.1 | NC_004681.1 | + | 39999 | 0.67 | 0.667704 |
Target: 5'- cAGGCUGGCcgcGCgCUGGGGGucuCCGCCc -3' miRNA: 3'- cUCUGGCCGa--UG-GACCUCUu--GGUGGc -5' |
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18499 | 3' | -57.1 | NC_004681.1 | + | 48767 | 0.67 | 0.657105 |
Target: 5'- aGGACggCGGCUacACCUGGAGugaGGCCGUCGa -3' miRNA: 3'- cUCUG--GCCGA--UGGACCUC---UUGGUGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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