miRNA display CGI


Results 1 - 20 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18499 5' -56.1 NC_004681.1 + 45405 0.66 0.770544
Target:  5'- aGCGGUGAAGCgcucagcaacuucgCCGCcuccauGGCCGCccucGGUg -3'
miRNA:   3'- cCGCUACUUCGa-------------GGCG------CCGGUGu---UCA- -5'
18499 5' -56.1 NC_004681.1 + 37781 0.66 0.766588
Target:  5'- uGGCGGaauuggaGAAGCgacgCGCGGCCGCuGGc -3'
miRNA:   3'- -CCGCUa------CUUCGag--GCGCCGGUGuUCa -5'
18499 5' -56.1 NC_004681.1 + 38967 0.66 0.766588
Target:  5'- cGCGGUGAAGCaguUCaugcgcuggGUGGCCgACGAGg -3'
miRNA:   3'- cCGCUACUUCG---AGg--------CGCCGG-UGUUCa -5'
18499 5' -56.1 NC_004681.1 + 17553 0.66 0.765596
Target:  5'- uGGCGGcacccccuucaacUGggGCagugacgCCGCGGCCAagcgccguGGUa -3'
miRNA:   3'- -CCGCU-------------ACuuCGa------GGCGCCGGUgu------UCA- -5'
18499 5' -56.1 NC_004681.1 + 7360 0.66 0.756607
Target:  5'- cGGCGccGAGGUggacggCCGCgucguggauGGCCugGAGa -3'
miRNA:   3'- -CCGCuaCUUCGa-----GGCG---------CCGGugUUCa -5'
18499 5' -56.1 NC_004681.1 + 60192 0.66 0.750559
Target:  5'- aGGCGAUGGagucacgaaucucgaAGC-CCGCguccucgauGGCCACGGu- -3'
miRNA:   3'- -CCGCUACU---------------UCGaGGCG---------CCGGUGUUca -5'
18499 5' -56.1 NC_004681.1 + 43800 0.66 0.746504
Target:  5'- cGGCGGUGua---CUGCGGCgGCGGGg -3'
miRNA:   3'- -CCGCUACuucgaGGCGCCGgUGUUCa -5'
18499 5' -56.1 NC_004681.1 + 32641 0.66 0.736291
Target:  5'- gGGCGucGAAGaugCCaGCGGCCACcAGg -3'
miRNA:   3'- -CCGCuaCUUCga-GG-CGCCGGUGuUCa -5'
18499 5' -56.1 NC_004681.1 + 1380 0.66 0.736291
Target:  5'- aGGCGGUGGccaccuaucgGGCcugCCGCaagaugaugGGCCACGAa- -3'
miRNA:   3'- -CCGCUACU----------UCGa--GGCG---------CCGGUGUUca -5'
18499 5' -56.1 NC_004681.1 + 39274 0.66 0.725978
Target:  5'- gGGCGAgcau-CUCCGCGGCC-CGGa- -3'
miRNA:   3'- -CCGCUacuucGAGGCGCCGGuGUUca -5'
18499 5' -56.1 NC_004681.1 + 60041 0.66 0.725978
Target:  5'- cGGCGGcucccgcaccUGGcaccGGCUgaCCGUGGCCAuCGAGg -3'
miRNA:   3'- -CCGCU----------ACU----UCGA--GGCGCCGGU-GUUCa -5'
18499 5' -56.1 NC_004681.1 + 2164 0.66 0.725978
Target:  5'- uGGUGAUGAucccAGCgUCGCGGCgcagugCGCGGGa -3'
miRNA:   3'- -CCGCUACU----UCGaGGCGCCG------GUGUUCa -5'
18499 5' -56.1 NC_004681.1 + 74396 0.66 0.722867
Target:  5'- cGGaCGGUGAGGacuacguggacagcCUCCGUgaGGCaCACAAGa -3'
miRNA:   3'- -CC-GCUACUUC--------------GAGGCG--CCG-GUGUUCa -5'
18499 5' -56.1 NC_004681.1 + 7479 0.67 0.715577
Target:  5'- gGGCG--GggGCUUCuucuCGGCCGCGGGc -3'
miRNA:   3'- -CCGCuaCuuCGAGGc---GCCGGUGUUCa -5'
18499 5' -56.1 NC_004681.1 + 54481 0.67 0.705096
Target:  5'- cGGCGAaGAGGUgaUCCGCaagcaGGCCAaGAGc -3'
miRNA:   3'- -CCGCUaCUUCG--AGGCG-----CCGGUgUUCa -5'
18499 5' -56.1 NC_004681.1 + 62957 0.67 0.705096
Target:  5'- cGGCGGUGGuGGCggCgGCGG-CGCGAGc -3'
miRNA:   3'- -CCGCUACU-UCGa-GgCGCCgGUGUUCa -5'
18499 5' -56.1 NC_004681.1 + 46964 0.67 0.705096
Target:  5'- aGGCGAUGuccaAGGCUCacagCGUGGCCuACcGGa -3'
miRNA:   3'- -CCGCUAC----UUCGAG----GCGCCGG-UGuUCa -5'
18499 5' -56.1 NC_004681.1 + 61767 0.67 0.705096
Target:  5'- cGGCGgcGGc-CUCCGCGGCgGCGGc- -3'
miRNA:   3'- -CCGCuaCUucGAGGCGCCGgUGUUca -5'
18499 5' -56.1 NC_004681.1 + 41954 0.67 0.694548
Target:  5'- aGGCGuggGAcaggucGGCUCCGCGgagaucggcccGCUGCAGGg -3'
miRNA:   3'- -CCGCua-CU------UCGAGGCGC-----------CGGUGUUCa -5'
18499 5' -56.1 NC_004681.1 + 16678 0.67 0.694548
Target:  5'- uGGCGAcGgcGCUCCGagcacCGGCCuguuccCGGGUa -3'
miRNA:   3'- -CCGCUaCuuCGAGGC-----GCCGGu-----GUUCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.