Results 21 - 40 of 66 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
18499 | 5' | -56.1 | NC_004681.1 | + | 19784 | 0.69 | 0.575831 |
Target: 5'- uGGUG-UGcGGCUCCGCuaagaacGGCCGCcAGUa -3' miRNA: 3'- -CCGCuACuUCGAGGCG-------CCGGUGuUCA- -5' |
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18499 | 5' | -56.1 | NC_004681.1 | + | 37056 | 0.69 | 0.576893 |
Target: 5'- cGGUGAUGGgguGGCUCaucccaGCGGCCuCAGa- -3' miRNA: 3'- -CCGCUACU---UCGAGg-----CGCCGGuGUUca -5' |
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18499 | 5' | -56.1 | NC_004681.1 | + | 30137 | 0.69 | 0.587541 |
Target: 5'- aGGCGGccugUGGgucgGGCUCaggcggCGCGGCCGCGgAGUg -3' miRNA: 3'- -CCGCU----ACU----UCGAG------GCGCCGGUGU-UCA- -5' |
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18499 | 5' | -56.1 | NC_004681.1 | + | 33860 | 0.68 | 0.630407 |
Target: 5'- uGGUGcgGAAGCUCCcagccgcgcuCGGCCGCuuccAGUu -3' miRNA: 3'- -CCGCuaCUUCGAGGc---------GCCGGUGu---UCA- -5' |
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18499 | 5' | -56.1 | NC_004681.1 | + | 12438 | 0.68 | 0.618593 |
Target: 5'- cGGCGAagUGAcgaucaccgucgaGGC-CC-CGGCCACGAGc -3' miRNA: 3'- -CCGCU--ACU-------------UCGaGGcGCCGGUGUUCa -5' |
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18499 | 5' | -56.1 | NC_004681.1 | + | 33956 | 0.68 | 0.608936 |
Target: 5'- uGUGAcUGAGGUcccgUCCGCGGCCA-AGGUu -3' miRNA: 3'- cCGCU-ACUUCG----AGGCGCCGGUgUUCA- -5' |
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18499 | 5' | -56.1 | NC_004681.1 | + | 64346 | 0.68 | 0.598225 |
Target: 5'- uGGCGAagaagUGAGGC-CCGCGG--ACAAGg -3' miRNA: 3'- -CCGCU-----ACUUCGaGGCGCCggUGUUCa -5' |
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18499 | 5' | -56.1 | NC_004681.1 | + | 58762 | 0.68 | 0.630407 |
Target: 5'- aGGCaGGUGuGGC-CCGCGG-CGCAGGc -3' miRNA: 3'- -CCG-CUACuUCGaGGCGCCgGUGUUCa -5' |
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18499 | 5' | -56.1 | NC_004681.1 | + | 29811 | 0.68 | 0.598225 |
Target: 5'- aGGCGcgGGAGCUCggcauccaaCGCGGCgCGCu--- -3' miRNA: 3'- -CCGCuaCUUCGAG---------GCGCCG-GUGuuca -5' |
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18499 | 5' | -56.1 | NC_004681.1 | + | 25238 | 0.68 | 0.598225 |
Target: 5'- cGGCGGccaUGgcGC-CCGCGGCgGCGguugGGUg -3' miRNA: 3'- -CCGCU---ACuuCGaGGCGCCGgUGU----UCA- -5' |
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18499 | 5' | -56.1 | NC_004681.1 | + | 15886 | 0.68 | 0.623961 |
Target: 5'- uGGCGGccgcgugggucaccgUGAAGaucgCCGUGGCCGCGGu- -3' miRNA: 3'- -CCGCU---------------ACUUCga--GGCGCCGGUGUUca -5' |
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18499 | 5' | -56.1 | NC_004681.1 | + | 28054 | 0.68 | 0.630407 |
Target: 5'- uGGCGGUcGAGGCg--GUGGCgGCAAGa -3' miRNA: 3'- -CCGCUA-CUUCGaggCGCCGgUGUUCa -5' |
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18499 | 5' | -56.1 | NC_004681.1 | + | 16025 | 0.68 | 0.640075 |
Target: 5'- aGCGAUGGccuggauGGUcuugaCCGCGGCCACGGc- -3' miRNA: 3'- cCGCUACU-------UCGa----GGCGCCGGUGUUca -5' |
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18499 | 5' | -56.1 | NC_004681.1 | + | 30156 | 0.68 | 0.65081 |
Target: 5'- cGCGAcagcgGGAGCUCCGaggccgaUGGCCGCGGc- -3' miRNA: 3'- cCGCUa----CUUCGAGGC-------GCCGGUGUUca -5' |
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18499 | 5' | -56.1 | NC_004681.1 | + | 8515 | 0.68 | 0.630407 |
Target: 5'- cGGaCGGUGAGaccGCccCCGCGGCCAUcGGc -3' miRNA: 3'- -CC-GCUACUU---CGa-GGCGCCGGUGuUCa -5' |
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18499 | 5' | -56.1 | NC_004681.1 | + | 44691 | 0.68 | 0.619666 |
Target: 5'- gGGUGAgu-AGUgCgGCGGCCGCGAGc -3' miRNA: 3'- -CCGCUacuUCGaGgCGCCGGUGUUCa -5' |
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18499 | 5' | -56.1 | NC_004681.1 | + | 10853 | 0.68 | 0.641149 |
Target: 5'- aGGUGAUGGAGCUugcccuugucCCaGUGGUCGCGGa- -3' miRNA: 3'- -CCGCUACUUCGA----------GG-CGCCGGUGUUca -5' |
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18499 | 5' | -56.1 | NC_004681.1 | + | 45078 | 0.68 | 0.651883 |
Target: 5'- cGCGGUcGAGGCccucgCCGCGGUCucgcuCAAGa -3' miRNA: 3'- cCGCUA-CUUCGa----GGCGCCGGu----GUUCa -5' |
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18499 | 5' | -56.1 | NC_004681.1 | + | 18469 | 0.68 | 0.630407 |
Target: 5'- gGGCcAUGAAGUUCgGUGGCCAg---- -3' miRNA: 3'- -CCGcUACUUCGAGgCGCCGGUguuca -5' |
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18499 | 5' | -56.1 | NC_004681.1 | + | 15404 | 0.68 | 0.598225 |
Target: 5'- cGCGAgcugGGAGCUCuCGUacauGGCCGgGAGg -3' miRNA: 3'- cCGCUa---CUUCGAG-GCG----CCGGUgUUCa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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