miRNA display CGI


Results 1 - 20 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18499 5' -56.1 NC_004681.1 + 56160 1.09 0.001204
Target:  5'- aGGCGAUGAAGCUCCGCGGCCACAAGUc -3'
miRNA:   3'- -CCGCUACUUCGAGGCGCCGGUGUUCA- -5'
18499 5' -56.1 NC_004681.1 + 53299 0.78 0.182968
Target:  5'- aGGCGAUGAacauacggAGCUCguagucguccaauguCGCGGCCAUGAGg -3'
miRNA:   3'- -CCGCUACU--------UCGAG---------------GCGCCGGUGUUCa -5'
18499 5' -56.1 NC_004681.1 + 7450 0.78 0.185881
Target:  5'- uGGCGG-GAGGCUucgCCGCGGCgGCGGGg -3'
miRNA:   3'- -CCGCUaCUUCGA---GGCGCCGgUGUUCa -5'
18499 5' -56.1 NC_004681.1 + 500 0.76 0.23112
Target:  5'- gGGCGuc-AAGCuggacccggccaucuUCCGCGGCCGCGAGUc -3'
miRNA:   3'- -CCGCuacUUCG---------------AGGCGCCGGUGUUCA- -5'
18499 5' -56.1 NC_004681.1 + 13121 0.76 0.234684
Target:  5'- cGGCGAUGAcAGUgucagUCGCGGCCACGu-- -3'
miRNA:   3'- -CCGCUACU-UCGa----GGCGCCGGUGUuca -5'
18499 5' -56.1 NC_004681.1 + 24977 0.73 0.355583
Target:  5'- cGGCGAcgGggGCUCUgGCGG-CACAGGc -3'
miRNA:   3'- -CCGCUa-CuuCGAGG-CGCCgGUGUUCa -5'
18499 5' -56.1 NC_004681.1 + 22194 0.72 0.380995
Target:  5'- cGGUGAUGcGGCgCUGCaacuuGGCCACAGGg -3'
miRNA:   3'- -CCGCUACuUCGaGGCG-----CCGGUGUUCa -5'
18499 5' -56.1 NC_004681.1 + 32010 0.72 0.398596
Target:  5'- cGgGAUGAGGC-CCGCGauggcggccGCCGCGAGg -3'
miRNA:   3'- cCgCUACUUCGaGGCGC---------CGGUGUUCa -5'
18499 5' -56.1 NC_004681.1 + 66556 0.72 0.40759
Target:  5'- aGGCGAUG-AGCuUCUGCacGCCGCGGGa -3'
miRNA:   3'- -CCGCUACuUCG-AGGCGc-CGGUGUUCa -5'
18499 5' -56.1 NC_004681.1 + 25204 0.72 0.41671
Target:  5'- aGCGggGuGGgUCCGCGGCCAacCGAGg -3'
miRNA:   3'- cCGCuaCuUCgAGGCGCCGGU--GUUCa -5'
18499 5' -56.1 NC_004681.1 + 44239 0.72 0.41671
Target:  5'- cGGcCGGUGAgggccaGGC-CCGCGGCCuCGGGg -3'
miRNA:   3'- -CC-GCUACU------UCGaGGCGCCGGuGUUCa -5'
18499 5' -56.1 NC_004681.1 + 9964 0.72 0.425954
Target:  5'- gGGCGAaGucucaggucaGGGUUaCUGCGGCCGCAAGUu -3'
miRNA:   3'- -CCGCUaC----------UUCGA-GGCGCCGGUGUUCA- -5'
18499 5' -56.1 NC_004681.1 + 61875 0.71 0.473921
Target:  5'- uGGCGAcGuaGAGCUCCuggccgaugGCGGCCGCGgucuGGUg -3'
miRNA:   3'- -CCGCUaC--UUCGAGG---------CGCCGGUGU----UCA- -5'
18499 5' -56.1 NC_004681.1 + 37832 0.7 0.503967
Target:  5'- aGGUGGUGAAGCUgCGCa--CACAGGa -3'
miRNA:   3'- -CCGCUACUUCGAgGCGccgGUGUUCa -5'
18499 5' -56.1 NC_004681.1 + 17772 0.7 0.514166
Target:  5'- gGGCGAgaaccucaugGAGGUUCCGCaGCCcacGCAGGc -3'
miRNA:   3'- -CCGCUa---------CUUCGAGGCGcCGG---UGUUCa -5'
18499 5' -56.1 NC_004681.1 + 14479 0.7 0.524449
Target:  5'- cGGCGAUGcGGUucUCCGCGGCgaucaUGCGGGc -3'
miRNA:   3'- -CCGCUACuUCG--AGGCGCCG-----GUGUUCa -5'
18499 5' -56.1 NC_004681.1 + 64687 0.69 0.545239
Target:  5'- uGGCGAUGGaugaagguggagAGCUUCuuGGCCACAu-- -3'
miRNA:   3'- -CCGCUACU------------UCGAGGcgCCGGUGUuca -5'
18499 5' -56.1 NC_004681.1 + 39667 0.69 0.566289
Target:  5'- -cCGAUGcGAGCUCCuCGGCCGCGc-- -3'
miRNA:   3'- ccGCUAC-UUCGAGGcGCCGGUGUuca -5'
18499 5' -56.1 NC_004681.1 + 30265 0.69 0.566289
Target:  5'- uGGCGuagGuccaCUCCGCGGCCGCGc-- -3'
miRNA:   3'- -CCGCua-Cuuc-GAGGCGCCGGUGUuca -5'
18499 5' -56.1 NC_004681.1 + 19784 0.69 0.575831
Target:  5'- uGGUG-UGcGGCUCCGCuaagaacGGCCGCcAGUa -3'
miRNA:   3'- -CCGCuACuUCGAGGCG-------CCGGUGuUCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.