miRNA display CGI


Results 1 - 20 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18499 5' -56.1 NC_004681.1 + 500 0.76 0.23112
Target:  5'- gGGCGuc-AAGCuggacccggccaucuUCCGCGGCCGCGAGUc -3'
miRNA:   3'- -CCGCuacUUCG---------------AGGCGCCGGUGUUCA- -5'
18499 5' -56.1 NC_004681.1 + 1380 0.66 0.736291
Target:  5'- aGGCGGUGGccaccuaucgGGCcugCCGCaagaugaugGGCCACGAa- -3'
miRNA:   3'- -CCGCUACU----------UCGa--GGCG---------CCGGUGUUca -5'
18499 5' -56.1 NC_004681.1 + 1993 0.67 0.688191
Target:  5'- gGGCGAUu-GGCUccagcacccauccggCCGCGGCCA--GGUg -3'
miRNA:   3'- -CCGCUAcuUCGA---------------GGCGCCGGUguUCA- -5'
18499 5' -56.1 NC_004681.1 + 2164 0.66 0.725978
Target:  5'- uGGUGAUGAucccAGCgUCGCGGCgcagugCGCGGGa -3'
miRNA:   3'- -CCGCUACU----UCGaGGCGCCG------GUGUUCa -5'
18499 5' -56.1 NC_004681.1 + 7360 0.66 0.756607
Target:  5'- cGGCGccGAGGUggacggCCGCgucguggauGGCCugGAGa -3'
miRNA:   3'- -CCGCuaCUUCGa-----GGCG---------CCGGugUUCa -5'
18499 5' -56.1 NC_004681.1 + 7450 0.78 0.185881
Target:  5'- uGGCGG-GAGGCUucgCCGCGGCgGCGGGg -3'
miRNA:   3'- -CCGCUaCUUCGA---GGCGCCGgUGUUCa -5'
18499 5' -56.1 NC_004681.1 + 7479 0.67 0.715577
Target:  5'- gGGCG--GggGCUUCuucuCGGCCGCGGGc -3'
miRNA:   3'- -CCGCuaCuuCGAGGc---GCCGGUGUUCa -5'
18499 5' -56.1 NC_004681.1 + 8515 0.68 0.630407
Target:  5'- cGGaCGGUGAGaccGCccCCGCGGCCAUcGGc -3'
miRNA:   3'- -CC-GCUACUU---CGa-GGCGCCGGUGuUCa -5'
18499 5' -56.1 NC_004681.1 + 9964 0.72 0.425954
Target:  5'- gGGCGAaGucucaggucaGGGUUaCUGCGGCCGCAAGUu -3'
miRNA:   3'- -CCGCUaC----------UUCGA-GGCGCCGGUGUUCA- -5'
18499 5' -56.1 NC_004681.1 + 10853 0.68 0.641149
Target:  5'- aGGUGAUGGAGCUugcccuugucCCaGUGGUCGCGGa- -3'
miRNA:   3'- -CCGCUACUUCGA----------GG-CGCCGGUGUUca -5'
18499 5' -56.1 NC_004681.1 + 12438 0.68 0.618593
Target:  5'- cGGCGAagUGAcgaucaccgucgaGGC-CC-CGGCCACGAGc -3'
miRNA:   3'- -CCGCU--ACU-------------UCGaGGcGCCGGUGUUCa -5'
18499 5' -56.1 NC_004681.1 + 13121 0.76 0.234684
Target:  5'- cGGCGAUGAcAGUgucagUCGCGGCCACGu-- -3'
miRNA:   3'- -CCGCUACU-UCGa----GGCGCCGGUGUuca -5'
18499 5' -56.1 NC_004681.1 + 14479 0.7 0.524449
Target:  5'- cGGCGAUGcGGUucUCCGCGGCgaucaUGCGGGc -3'
miRNA:   3'- -CCGCUACuUCG--AGGCGCCG-----GUGUUCa -5'
18499 5' -56.1 NC_004681.1 + 15404 0.68 0.598225
Target:  5'- cGCGAgcugGGAGCUCuCGUacauGGCCGgGAGg -3'
miRNA:   3'- cCGCUa---CUUCGAG-GCG----CCGGUgUUCa -5'
18499 5' -56.1 NC_004681.1 + 15886 0.68 0.623961
Target:  5'- uGGCGGccgcgugggucaccgUGAAGaucgCCGUGGCCGCGGu- -3'
miRNA:   3'- -CCGCU---------------ACUUCga--GGCGCCGGUGUUca -5'
18499 5' -56.1 NC_004681.1 + 16025 0.68 0.640075
Target:  5'- aGCGAUGGccuggauGGUcuugaCCGCGGCCACGGc- -3'
miRNA:   3'- cCGCUACU-------UCGa----GGCGCCGGUGUUca -5'
18499 5' -56.1 NC_004681.1 + 16678 0.67 0.694548
Target:  5'- uGGCGAcGgcGCUCCGagcacCGGCCuguuccCGGGUa -3'
miRNA:   3'- -CCGCUaCuuCGAGGC-----GCCGGu-----GUUCA- -5'
18499 5' -56.1 NC_004681.1 + 17553 0.66 0.765596
Target:  5'- uGGCGGcacccccuucaacUGggGCagugacgCCGCGGCCAagcgccguGGUa -3'
miRNA:   3'- -CCGCU-------------ACuuCGa------GGCGCCGGUgu------UCA- -5'
18499 5' -56.1 NC_004681.1 + 17772 0.7 0.514166
Target:  5'- gGGCGAgaaccucaugGAGGUUCCGCaGCCcacGCAGGc -3'
miRNA:   3'- -CCGCUa---------CUUCGAGGCGcCGG---UGUUCa -5'
18499 5' -56.1 NC_004681.1 + 17907 0.67 0.67329
Target:  5'- cGGCGgcGAGGgUCCgguacucaaGCGGuccCCGCAGGUg -3'
miRNA:   3'- -CCGCuaCUUCgAGG---------CGCC---GGUGUUCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.