miRNA display CGI


Results 21 - 40 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18499 5' -56.1 NC_004681.1 + 18469 0.68 0.630407
Target:  5'- gGGCcAUGAAGUUCgGUGGCCAg---- -3'
miRNA:   3'- -CCGcUACUUCGAGgCGCCGGUguuca -5'
18499 5' -56.1 NC_004681.1 + 19784 0.69 0.575831
Target:  5'- uGGUG-UGcGGCUCCGCuaagaacGGCCGCcAGUa -3'
miRNA:   3'- -CCGCuACuUCGAGGCG-------CCGGUGuUCA- -5'
18499 5' -56.1 NC_004681.1 + 22194 0.72 0.380995
Target:  5'- cGGUGAUGcGGCgCUGCaacuuGGCCACAGGg -3'
miRNA:   3'- -CCGCUACuUCGaGGCG-----CCGGUGUUCa -5'
18499 5' -56.1 NC_004681.1 + 24958 0.67 0.683942
Target:  5'- uGGUGAgGGAGcCUUgGCGGCCGCc--- -3'
miRNA:   3'- -CCGCUaCUUC-GAGgCGCCGGUGuuca -5'
18499 5' -56.1 NC_004681.1 + 24977 0.73 0.355583
Target:  5'- cGGCGAcgGggGCUCUgGCGG-CACAGGc -3'
miRNA:   3'- -CCGCUa-CuuCGAGG-CGCCgGUGUUCa -5'
18499 5' -56.1 NC_004681.1 + 25204 0.72 0.41671
Target:  5'- aGCGggGuGGgUCCGCGGCCAacCGAGg -3'
miRNA:   3'- cCGCuaCuUCgAGGCGCCGGU--GUUCa -5'
18499 5' -56.1 NC_004681.1 + 25238 0.68 0.598225
Target:  5'- cGGCGGccaUGgcGC-CCGCGGCgGCGguugGGUg -3'
miRNA:   3'- -CCGCU---ACuuCGaGGCGCCGgUGU----UCA- -5'
18499 5' -56.1 NC_004681.1 + 26953 0.69 0.576893
Target:  5'- uGGCGGUGggGaccggcccaCUGCGGUCcCAGGUa -3'
miRNA:   3'- -CCGCUACuuCga-------GGCGCCGGuGUUCA- -5'
18499 5' -56.1 NC_004681.1 + 28054 0.68 0.630407
Target:  5'- uGGCGGUcGAGGCg--GUGGCgGCAAGa -3'
miRNA:   3'- -CCGCUA-CUUCGaggCGCCGgUGUUCa -5'
18499 5' -56.1 NC_004681.1 + 29811 0.68 0.598225
Target:  5'- aGGCGcgGGAGCUCggcauccaaCGCGGCgCGCu--- -3'
miRNA:   3'- -CCGCuaCUUCGAG---------GCGCCG-GUGuuca -5'
18499 5' -56.1 NC_004681.1 + 30137 0.69 0.587541
Target:  5'- aGGCGGccugUGGgucgGGCUCaggcggCGCGGCCGCGgAGUg -3'
miRNA:   3'- -CCGCU----ACU----UCGAG------GCGCCGGUGU-UCA- -5'
18499 5' -56.1 NC_004681.1 + 30156 0.68 0.65081
Target:  5'- cGCGAcagcgGGAGCUCCGaggccgaUGGCCGCGGc- -3'
miRNA:   3'- cCGCUa----CUUCGAGGC-------GCCGGUGUUca -5'
18499 5' -56.1 NC_004681.1 + 30265 0.69 0.566289
Target:  5'- uGGCGuagGuccaCUCCGCGGCCGCGc-- -3'
miRNA:   3'- -CCGCua-Cuuc-GAGGCGCCGGUGUuca -5'
18499 5' -56.1 NC_004681.1 + 32010 0.72 0.398596
Target:  5'- cGgGAUGAGGC-CCGCGauggcggccGCCGCGAGg -3'
miRNA:   3'- cCgCUACUUCGaGGCGC---------CGGUGUUCa -5'
18499 5' -56.1 NC_004681.1 + 32641 0.66 0.736291
Target:  5'- gGGCGucGAAGaugCCaGCGGCCACcAGg -3'
miRNA:   3'- -CCGCuaCUUCga-GG-CGCCGGUGuUCa -5'
18499 5' -56.1 NC_004681.1 + 33860 0.68 0.630407
Target:  5'- uGGUGcgGAAGCUCCcagccgcgcuCGGCCGCuuccAGUu -3'
miRNA:   3'- -CCGCuaCUUCGAGGc---------GCCGGUGu---UCA- -5'
18499 5' -56.1 NC_004681.1 + 33956 0.68 0.608936
Target:  5'- uGUGAcUGAGGUcccgUCCGCGGCCA-AGGUu -3'
miRNA:   3'- cCGCU-ACUUCG----AGGCGCCGGUgUUCA- -5'
18499 5' -56.1 NC_004681.1 + 37056 0.69 0.576893
Target:  5'- cGGUGAUGGgguGGCUCaucccaGCGGCCuCAGa- -3'
miRNA:   3'- -CCGCUACU---UCGAGg-----CGCCGGuGUUca -5'
18499 5' -56.1 NC_004681.1 + 37781 0.66 0.766588
Target:  5'- uGGCGGaauuggaGAAGCgacgCGCGGCCGCuGGc -3'
miRNA:   3'- -CCGCUa------CUUCGag--GCGCCGGUGuUCa -5'
18499 5' -56.1 NC_004681.1 + 37832 0.7 0.503967
Target:  5'- aGGUGGUGAAGCUgCGCa--CACAGGa -3'
miRNA:   3'- -CCGCUACUUCGAgGCGccgGUGUUCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.