miRNA display CGI


Results 1 - 20 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18499 5' -56.1 NC_004681.1 + 74396 0.66 0.722867
Target:  5'- cGGaCGGUGAGGacuacguggacagcCUCCGUgaGGCaCACAAGa -3'
miRNA:   3'- -CC-GCUACUUC--------------GAGGCG--CCG-GUGUUCa -5'
18499 5' -56.1 NC_004681.1 + 68980 0.67 0.67329
Target:  5'- -uCGAUGgcGUcggCCGCGGCCAguAGa -3'
miRNA:   3'- ccGCUACuuCGa--GGCGCCGGUguUCa -5'
18499 5' -56.1 NC_004681.1 + 67203 0.67 0.683942
Target:  5'- aGGCGAUGAGGCUgucggcaaCCGCa-CC-CGGGUg -3'
miRNA:   3'- -CCGCUACUUCGA--------GGCGccGGuGUUCA- -5'
18499 5' -56.1 NC_004681.1 + 66556 0.72 0.40759
Target:  5'- aGGCGAUG-AGCuUCUGCacGCCGCGGGa -3'
miRNA:   3'- -CCGCUACuUCG-AGGCGc-CGGUGUUCa -5'
18499 5' -56.1 NC_004681.1 + 64687 0.69 0.545239
Target:  5'- uGGCGAUGGaugaagguggagAGCUUCuuGGCCACAu-- -3'
miRNA:   3'- -CCGCUACU------------UCGAGGcgCCGGUGUuca -5'
18499 5' -56.1 NC_004681.1 + 64346 0.68 0.598225
Target:  5'- uGGCGAagaagUGAGGC-CCGCGG--ACAAGg -3'
miRNA:   3'- -CCGCU-----ACUUCGaGGCGCCggUGUUCa -5'
18499 5' -56.1 NC_004681.1 + 62957 0.67 0.705096
Target:  5'- cGGCGGUGGuGGCggCgGCGG-CGCGAGc -3'
miRNA:   3'- -CCGCUACU-UCGa-GgCGCCgGUGUUCa -5'
18499 5' -56.1 NC_004681.1 + 61875 0.71 0.473921
Target:  5'- uGGCGAcGuaGAGCUCCuggccgaugGCGGCCGCGgucuGGUg -3'
miRNA:   3'- -CCGCUaC--UUCGAGG---------CGCCGGUGU----UCA- -5'
18499 5' -56.1 NC_004681.1 + 61767 0.67 0.705096
Target:  5'- cGGCGgcGGc-CUCCGCGGCgGCGGc- -3'
miRNA:   3'- -CCGCuaCUucGAGGCGCCGgUGUUca -5'
18499 5' -56.1 NC_004681.1 + 60192 0.66 0.750559
Target:  5'- aGGCGAUGGagucacgaaucucgaAGC-CCGCguccucgauGGCCACGGu- -3'
miRNA:   3'- -CCGCUACU---------------UCGaGGCG---------CCGGUGUUca -5'
18499 5' -56.1 NC_004681.1 + 60041 0.66 0.725978
Target:  5'- cGGCGGcucccgcaccUGGcaccGGCUgaCCGUGGCCAuCGAGg -3'
miRNA:   3'- -CCGCU----------ACU----UCGA--GGCGCCGGU-GUUCa -5'
18499 5' -56.1 NC_004681.1 + 58762 0.68 0.630407
Target:  5'- aGGCaGGUGuGGC-CCGCGG-CGCAGGc -3'
miRNA:   3'- -CCG-CUACuUCGaGGCGCCgGUGUUCa -5'
18499 5' -56.1 NC_004681.1 + 56160 1.09 0.001204
Target:  5'- aGGCGAUGAAGCUCCGCGGCCACAAGUc -3'
miRNA:   3'- -CCGCUACUUCGAGGCGCCGGUGUUCA- -5'
18499 5' -56.1 NC_004681.1 + 54481 0.67 0.705096
Target:  5'- cGGCGAaGAGGUgaUCCGCaagcaGGCCAaGAGc -3'
miRNA:   3'- -CCGCUaCUUCG--AGGCG-----CCGGUgUUCa -5'
18499 5' -56.1 NC_004681.1 + 53603 0.67 0.6626
Target:  5'- cGCGAUGuca--CCGCGGUCAUggGUg -3'
miRNA:   3'- cCGCUACuucgaGGCGCCGGUGuuCA- -5'
18499 5' -56.1 NC_004681.1 + 53299 0.78 0.182968
Target:  5'- aGGCGAUGAacauacggAGCUCguagucguccaauguCGCGGCCAUGAGg -3'
miRNA:   3'- -CCGCUACU--------UCGAG---------------GCGCCGGUGUUCa -5'
18499 5' -56.1 NC_004681.1 + 46964 0.67 0.705096
Target:  5'- aGGCGAUGuccaAGGCUCacagCGUGGCCuACcGGa -3'
miRNA:   3'- -CCGCUAC----UUCGAG----GCGCCGG-UGuUCa -5'
18499 5' -56.1 NC_004681.1 + 45405 0.66 0.770544
Target:  5'- aGCGGUGAAGCgcucagcaacuucgCCGCcuccauGGCCGCccucGGUg -3'
miRNA:   3'- cCGCUACUUCGa-------------GGCG------CCGGUGu---UCA- -5'
18499 5' -56.1 NC_004681.1 + 45078 0.68 0.651883
Target:  5'- cGCGGUcGAGGCccucgCCGCGGUCucgcuCAAGa -3'
miRNA:   3'- cCGCUA-CUUCGa----GGCGCCGGu----GUUCa -5'
18499 5' -56.1 NC_004681.1 + 44691 0.68 0.619666
Target:  5'- gGGUGAgu-AGUgCgGCGGCCGCGAGc -3'
miRNA:   3'- -CCGCUacuUCGaGgCGCCGGUGUUCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.