Results 1 - 20 of 38 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
1850 | 3' | -52.2 | NC_001347.2 | + | 47982 | 0.66 | 0.990764 |
Target: 5'- -cGggGCgGCUGCUccagguccgcGGAGCuaaUGCCg -3' miRNA: 3'- uuCuuCGaCGACGA----------CUUCGugaACGG- -5' |
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1850 | 3' | -52.2 | NC_001347.2 | + | 124356 | 0.66 | 0.989458 |
Target: 5'- cAGGAGCUGCUgaugcgGCUGGAcCGCgaGCg -3' miRNA: 3'- uUCUUCGACGA------CGACUUcGUGaaCGg -5' |
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1850 | 3' | -52.2 | NC_001347.2 | + | 103161 | 0.66 | 0.989458 |
Target: 5'- ---uGGCaccGCUGCUGGAGCGaccgcUGCCc -3' miRNA: 3'- uucuUCGa--CGACGACUUCGUga---ACGG- -5' |
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1850 | 3' | -52.2 | NC_001347.2 | + | 192651 | 0.66 | 0.988013 |
Target: 5'- -cGGAGC-GCguaGCUGA--CGCUUGCCu -3' miRNA: 3'- uuCUUCGaCGa--CGACUucGUGAACGG- -5' |
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1850 | 3' | -52.2 | NC_001347.2 | + | 88035 | 0.66 | 0.988013 |
Target: 5'- uGGAug--GCUGC-GAGGCGCUgGCCg -3' miRNA: 3'- uUCUucgaCGACGaCUUCGUGAaCGG- -5' |
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1850 | 3' | -52.2 | NC_001347.2 | + | 228386 | 0.66 | 0.988013 |
Target: 5'- ----uGCUGCgGCUGGcuGGCGCUgggcgcggugcUGCCc -3' miRNA: 3'- uucuuCGACGaCGACU--UCGUGA-----------ACGG- -5' |
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1850 | 3' | -52.2 | NC_001347.2 | + | 229670 | 0.66 | 0.986419 |
Target: 5'- cGGGAGGCgGCUGUgcgcuccagUGGuacGCGCcUGCCg -3' miRNA: 3'- -UUCUUCGaCGACG---------ACUu--CGUGaACGG- -5' |
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1850 | 3' | -52.2 | NC_001347.2 | + | 115815 | 0.66 | 0.986419 |
Target: 5'- uGAGcGGCgGaCUGCUGAcGCGCUUugugcagcGCCa -3' miRNA: 3'- -UUCuUCGaC-GACGACUuCGUGAA--------CGG- -5' |
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1850 | 3' | -52.2 | NC_001347.2 | + | 198331 | 0.66 | 0.986419 |
Target: 5'- -cGAugguGCUGCUGUUGGGauacGUGCUgGCCa -3' miRNA: 3'- uuCUu---CGACGACGACUU----CGUGAaCGG- -5' |
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1850 | 3' | -52.2 | NC_001347.2 | + | 106955 | 0.66 | 0.984666 |
Target: 5'- -cGuAGUUGUUGCaGAAGUugUUGCa -3' miRNA: 3'- uuCuUCGACGACGaCUUCGugAACGg -5' |
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1850 | 3' | -52.2 | NC_001347.2 | + | 73873 | 0.66 | 0.984666 |
Target: 5'- cGAGAAuCUGCUGCgcGAGCugUacGCCa -3' miRNA: 3'- -UUCUUcGACGACGacUUCGugAa-CGG- -5' |
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1850 | 3' | -52.2 | NC_001347.2 | + | 117931 | 0.67 | 0.982747 |
Target: 5'- -uGuuGCUGCUGCUGAuuggaaccCGCgUGCCc -3' miRNA: 3'- uuCuuCGACGACGACUuc------GUGaACGG- -5' |
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1850 | 3' | -52.2 | NC_001347.2 | + | 80555 | 0.67 | 0.982747 |
Target: 5'- --cGAGCUGCUGCUG-GGCuuuaUGCUu -3' miRNA: 3'- uucUUCGACGACGACuUCGuga-ACGG- -5' |
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1850 | 3' | -52.2 | NC_001347.2 | + | 163294 | 0.67 | 0.980653 |
Target: 5'- cGGAcauGCgGCUGCUGggGgGCcaacGCCg -3' miRNA: 3'- uUCUu--CGaCGACGACuuCgUGaa--CGG- -5' |
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1850 | 3' | -52.2 | NC_001347.2 | + | 121016 | 0.67 | 0.978374 |
Target: 5'- -----cUUGCUGCUGcAGCGCggGCCu -3' miRNA: 3'- uucuucGACGACGACuUCGUGaaCGG- -5' |
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1850 | 3' | -52.2 | NC_001347.2 | + | 32818 | 0.67 | 0.978374 |
Target: 5'- uGGAAGCUGCUGgUGGugacccagGGuCAgUUGCg -3' miRNA: 3'- uUCUUCGACGACgACU--------UC-GUgAACGg -5' |
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1850 | 3' | -52.2 | NC_001347.2 | + | 42499 | 0.67 | 0.975903 |
Target: 5'- cAGGAGCgcugcaaGCUGCUGGucaaggagcuGCGCaugUGCCu -3' miRNA: 3'- uUCUUCGa------CGACGACUu---------CGUGa--ACGG- -5' |
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1850 | 3' | -52.2 | NC_001347.2 | + | 89947 | 0.67 | 0.975903 |
Target: 5'- -cGggGCUGUgcgagGCcugugGggGUACUuguUGCCa -3' miRNA: 3'- uuCuuCGACGa----CGa----CuuCGUGA---ACGG- -5' |
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1850 | 3' | -52.2 | NC_001347.2 | + | 224638 | 0.68 | 0.97035 |
Target: 5'- cGGGGAcCUGUUGCUcuGGCGCUUcGCCc -3' miRNA: 3'- -UUCUUcGACGACGAcuUCGUGAA-CGG- -5' |
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1850 | 3' | -52.2 | NC_001347.2 | + | 161825 | 0.68 | 0.967255 |
Target: 5'- -uGAAGCccUGCUGCgucuuGGCGCcgGCCg -3' miRNA: 3'- uuCUUCG--ACGACGacu--UCGUGaaCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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