miRNA display CGI


Results 21 - 38 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1850 3' -52.2 NC_001347.2 + 161825 0.68 0.967255
Target:  5'- -uGAAGCccUGCUGCgucuuGGCGCcgGCCg -3'
miRNA:   3'- uuCUUCG--ACGACGacu--UCGUGaaCGG- -5'
1850 3' -52.2 NC_001347.2 + 139381 0.68 0.963937
Target:  5'- cAGGAGCgcuacgcggaGCUGCaGAAGCGCaagaGCCa -3'
miRNA:   3'- uUCUUCGa---------CGACGaCUUCGUGaa--CGG- -5'
1850 3' -52.2 NC_001347.2 + 131373 0.68 0.963937
Target:  5'- cGAGGAGUUGCUGUUGca-CACcacgGCCg -3'
miRNA:   3'- -UUCUUCGACGACGACuucGUGaa--CGG- -5'
1850 3' -52.2 NC_001347.2 + 214042 0.68 0.963937
Target:  5'- aGAGAuuCUGCUGCUGu-GCGCgcGUCa -3'
miRNA:   3'- -UUCUucGACGACGACuuCGUGaaCGG- -5'
1850 3' -52.2 NC_001347.2 + 189610 0.68 0.960392
Target:  5'- cGGggGUUGC-GCUGggGCcgggGCUguucgcGCCg -3'
miRNA:   3'- uUCuuCGACGaCGACuuCG----UGAa-----CGG- -5'
1850 3' -52.2 NC_001347.2 + 33342 0.68 0.956613
Target:  5'- --cAAGCUGCgccgggGCUGucGCGCgccGCCg -3'
miRNA:   3'- uucUUCGACGa-----CGACuuCGUGaa-CGG- -5'
1850 3' -52.2 NC_001347.2 + 113649 0.68 0.952595
Target:  5'- -cGggGUUGCucuUGCUGAgcugcaugAGCACggcGCCg -3'
miRNA:   3'- uuCuuCGACG---ACGACU--------UCGUGaa-CGG- -5'
1850 3' -52.2 NC_001347.2 + 28511 0.68 0.951343
Target:  5'- aGAGGAGCUGCcGCacaccgccucgcuuaGAGCGCUgGCCg -3'
miRNA:   3'- -UUCUUCGACGaCGac-------------UUCGUGAaCGG- -5'
1850 3' -52.2 NC_001347.2 + 105264 0.69 0.943829
Target:  5'- -cGAccGGCgGCUGCUGuuGCACggGCUc -3'
miRNA:   3'- uuCU--UCGaCGACGACuuCGUGaaCGG- -5'
1850 3' -52.2 NC_001347.2 + 152434 0.69 0.939073
Target:  5'- -uGgcGCUGCUGCUGcagguggccGAGCGCcugggcGCCg -3'
miRNA:   3'- uuCuuCGACGACGAC---------UUCGUGaa----CGG- -5'
1850 3' -52.2 NC_001347.2 + 34217 0.7 0.917529
Target:  5'- cGAGGAGCUGUaccUGCgccugGAcGGCACccugUGCCu -3'
miRNA:   3'- -UUCUUCGACG---ACGa----CU-UCGUGa---ACGG- -5'
1850 3' -52.2 NC_001347.2 + 86861 0.7 0.917529
Target:  5'- -uGGAGaUGCUGCUGAAgGCGCU-GCa -3'
miRNA:   3'- uuCUUCgACGACGACUU-CGUGAaCGg -5'
1850 3' -52.2 NC_001347.2 + 105286 0.7 0.898726
Target:  5'- -uGggGCUGCUGCU---GCACggGCUc -3'
miRNA:   3'- uuCuuCGACGACGAcuuCGUGaaCGG- -5'
1850 3' -52.2 NC_001347.2 + 56337 0.71 0.891964
Target:  5'- cAAGAAGCaaaagUGCgGCUaGAGCGCggGCCg -3'
miRNA:   3'- -UUCUUCG-----ACGaCGAcUUCGUGaaCGG- -5'
1850 3' -52.2 NC_001347.2 + 32650 0.72 0.81199
Target:  5'- ----cGCaGCUGCUGGAGCGCg-GCCu -3'
miRNA:   3'- uucuuCGaCGACGACUUCGUGaaCGG- -5'
1850 3' -52.2 NC_001347.2 + 225400 0.73 0.793665
Target:  5'- cGAGgcGCUGCU-CUGAAGCcaagUGCCg -3'
miRNA:   3'- -UUCuuCGACGAcGACUUCGuga-ACGG- -5'
1850 3' -52.2 NC_001347.2 + 221557 0.73 0.774721
Target:  5'- aAAGAGG-UGCUGCUGAAGUAagacgUGUCa -3'
miRNA:   3'- -UUCUUCgACGACGACUUCGUga---ACGG- -5'
1850 3' -52.2 NC_001347.2 + 45175 0.78 0.497417
Target:  5'- gAAGAGGUUGCUGUUGcGGCGCgagcaGCCg -3'
miRNA:   3'- -UUCUUCGACGACGACuUCGUGaa---CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.