miRNA display CGI


Results 1 - 20 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1850 3' -52.2 NC_001347.2 + 28511 0.68 0.951343
Target:  5'- aGAGGAGCUGCcGCacaccgccucgcuuaGAGCGCUgGCCg -3'
miRNA:   3'- -UUCUUCGACGaCGac-------------UUCGUGAaCGG- -5'
1850 3' -52.2 NC_001347.2 + 32650 0.72 0.81199
Target:  5'- ----cGCaGCUGCUGGAGCGCg-GCCu -3'
miRNA:   3'- uucuuCGaCGACGACUUCGUGaaCGG- -5'
1850 3' -52.2 NC_001347.2 + 32818 0.67 0.978374
Target:  5'- uGGAAGCUGCUGgUGGugacccagGGuCAgUUGCg -3'
miRNA:   3'- uUCUUCGACGACgACU--------UC-GUgAACGg -5'
1850 3' -52.2 NC_001347.2 + 33342 0.68 0.956613
Target:  5'- --cAAGCUGCgccgggGCUGucGCGCgccGCCg -3'
miRNA:   3'- uucUUCGACGa-----CGACuuCGUGaa-CGG- -5'
1850 3' -52.2 NC_001347.2 + 34217 0.7 0.917529
Target:  5'- cGAGGAGCUGUaccUGCgccugGAcGGCACccugUGCCu -3'
miRNA:   3'- -UUCUUCGACG---ACGa----CU-UCGUGa---ACGG- -5'
1850 3' -52.2 NC_001347.2 + 42499 0.67 0.975903
Target:  5'- cAGGAGCgcugcaaGCUGCUGGucaaggagcuGCGCaugUGCCu -3'
miRNA:   3'- uUCUUCGa------CGACGACUu---------CGUGa--ACGG- -5'
1850 3' -52.2 NC_001347.2 + 45175 0.78 0.497417
Target:  5'- gAAGAGGUUGCUGUUGcGGCGCgagcaGCCg -3'
miRNA:   3'- -UUCUUCGACGACGACuUCGUGaa---CGG- -5'
1850 3' -52.2 NC_001347.2 + 47982 0.66 0.990764
Target:  5'- -cGggGCgGCUGCUccagguccgcGGAGCuaaUGCCg -3'
miRNA:   3'- uuCuuCGaCGACGA----------CUUCGugaACGG- -5'
1850 3' -52.2 NC_001347.2 + 56337 0.71 0.891964
Target:  5'- cAAGAAGCaaaagUGCgGCUaGAGCGCggGCCg -3'
miRNA:   3'- -UUCUUCG-----ACGaCGAcUUCGUGaaCGG- -5'
1850 3' -52.2 NC_001347.2 + 73873 0.66 0.984666
Target:  5'- cGAGAAuCUGCUGCgcGAGCugUacGCCa -3'
miRNA:   3'- -UUCUUcGACGACGacUUCGugAa-CGG- -5'
1850 3' -52.2 NC_001347.2 + 80555 0.67 0.982747
Target:  5'- --cGAGCUGCUGCUG-GGCuuuaUGCUu -3'
miRNA:   3'- uucUUCGACGACGACuUCGuga-ACGG- -5'
1850 3' -52.2 NC_001347.2 + 86861 0.7 0.917529
Target:  5'- -uGGAGaUGCUGCUGAAgGCGCU-GCa -3'
miRNA:   3'- uuCUUCgACGACGACUU-CGUGAaCGg -5'
1850 3' -52.2 NC_001347.2 + 88035 0.66 0.988013
Target:  5'- uGGAug--GCUGC-GAGGCGCUgGCCg -3'
miRNA:   3'- uUCUucgaCGACGaCUUCGUGAaCGG- -5'
1850 3' -52.2 NC_001347.2 + 89947 0.67 0.975903
Target:  5'- -cGggGCUGUgcgagGCcugugGggGUACUuguUGCCa -3'
miRNA:   3'- uuCuuCGACGa----CGa----CuuCGUGA---ACGG- -5'
1850 3' -52.2 NC_001347.2 + 103161 0.66 0.989458
Target:  5'- ---uGGCaccGCUGCUGGAGCGaccgcUGCCc -3'
miRNA:   3'- uucuUCGa--CGACGACUUCGUga---ACGG- -5'
1850 3' -52.2 NC_001347.2 + 105264 0.69 0.943829
Target:  5'- -cGAccGGCgGCUGCUGuuGCACggGCUc -3'
miRNA:   3'- uuCU--UCGaCGACGACuuCGUGaaCGG- -5'
1850 3' -52.2 NC_001347.2 + 105286 0.7 0.898726
Target:  5'- -uGggGCUGCUGCU---GCACggGCUc -3'
miRNA:   3'- uuCuuCGACGACGAcuuCGUGaaCGG- -5'
1850 3' -52.2 NC_001347.2 + 106955 0.66 0.984666
Target:  5'- -cGuAGUUGUUGCaGAAGUugUUGCa -3'
miRNA:   3'- uuCuUCGACGACGaCUUCGugAACGg -5'
1850 3' -52.2 NC_001347.2 + 113649 0.68 0.952595
Target:  5'- -cGggGUUGCucuUGCUGAgcugcaugAGCACggcGCCg -3'
miRNA:   3'- uuCuuCGACG---ACGACU--------UCGUGaa-CGG- -5'
1850 3' -52.2 NC_001347.2 + 115815 0.66 0.986419
Target:  5'- uGAGcGGCgGaCUGCUGAcGCGCUUugugcagcGCCa -3'
miRNA:   3'- -UUCuUCGaC-GACGACUuCGUGAA--------CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.