miRNA display CGI


Results 21 - 38 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1850 3' -52.2 NC_001347.2 + 117931 0.67 0.982747
Target:  5'- -uGuuGCUGCUGCUGAuuggaaccCGCgUGCCc -3'
miRNA:   3'- uuCuuCGACGACGACUuc------GUGaACGG- -5'
1850 3' -52.2 NC_001347.2 + 121016 0.67 0.978374
Target:  5'- -----cUUGCUGCUGcAGCGCggGCCu -3'
miRNA:   3'- uucuucGACGACGACuUCGUGaaCGG- -5'
1850 3' -52.2 NC_001347.2 + 124356 0.66 0.989458
Target:  5'- cAGGAGCUGCUgaugcgGCUGGAcCGCgaGCg -3'
miRNA:   3'- uUCUUCGACGA------CGACUUcGUGaaCGg -5'
1850 3' -52.2 NC_001347.2 + 131373 0.68 0.963937
Target:  5'- cGAGGAGUUGCUGUUGca-CACcacgGCCg -3'
miRNA:   3'- -UUCUUCGACGACGACuucGUGaa--CGG- -5'
1850 3' -52.2 NC_001347.2 + 139381 0.68 0.963937
Target:  5'- cAGGAGCgcuacgcggaGCUGCaGAAGCGCaagaGCCa -3'
miRNA:   3'- uUCUUCGa---------CGACGaCUUCGUGaa--CGG- -5'
1850 3' -52.2 NC_001347.2 + 152434 0.69 0.939073
Target:  5'- -uGgcGCUGCUGCUGcagguggccGAGCGCcugggcGCCg -3'
miRNA:   3'- uuCuuCGACGACGAC---------UUCGUGaa----CGG- -5'
1850 3' -52.2 NC_001347.2 + 155206 0.68 0.967255
Target:  5'- uGAGAcGCUGCaugaGCUGGuAGCGCUUGa- -3'
miRNA:   3'- -UUCUuCGACGa---CGACU-UCGUGAACgg -5'
1850 3' -52.2 NC_001347.2 + 161825 0.68 0.967255
Target:  5'- -uGAAGCccUGCUGCgucuuGGCGCcgGCCg -3'
miRNA:   3'- uuCUUCG--ACGACGacu--UCGUGaaCGG- -5'
1850 3' -52.2 NC_001347.2 + 163294 0.67 0.980653
Target:  5'- cGGAcauGCgGCUGCUGggGgGCcaacGCCg -3'
miRNA:   3'- uUCUu--CGaCGACGACuuCgUGaa--CGG- -5'
1850 3' -52.2 NC_001347.2 + 189610 0.68 0.960392
Target:  5'- cGGggGUUGC-GCUGggGCcgggGCUguucgcGCCg -3'
miRNA:   3'- uUCuuCGACGaCGACuuCG----UGAa-----CGG- -5'
1850 3' -52.2 NC_001347.2 + 192651 0.66 0.988013
Target:  5'- -cGGAGC-GCguaGCUGA--CGCUUGCCu -3'
miRNA:   3'- uuCUUCGaCGa--CGACUucGUGAACGG- -5'
1850 3' -52.2 NC_001347.2 + 198331 0.66 0.986419
Target:  5'- -cGAugguGCUGCUGUUGGGauacGUGCUgGCCa -3'
miRNA:   3'- uuCUu---CGACGACGACUU----CGUGAaCGG- -5'
1850 3' -52.2 NC_001347.2 + 214042 0.68 0.963937
Target:  5'- aGAGAuuCUGCUGCUGu-GCGCgcGUCa -3'
miRNA:   3'- -UUCUucGACGACGACuuCGUGaaCGG- -5'
1850 3' -52.2 NC_001347.2 + 221557 0.73 0.774721
Target:  5'- aAAGAGG-UGCUGCUGAAGUAagacgUGUCa -3'
miRNA:   3'- -UUCUUCgACGACGACUUCGUga---ACGG- -5'
1850 3' -52.2 NC_001347.2 + 224638 0.68 0.97035
Target:  5'- cGGGGAcCUGUUGCUcuGGCGCUUcGCCc -3'
miRNA:   3'- -UUCUUcGACGACGAcuUCGUGAA-CGG- -5'
1850 3' -52.2 NC_001347.2 + 225400 0.73 0.793665
Target:  5'- cGAGgcGCUGCU-CUGAAGCcaagUGCCg -3'
miRNA:   3'- -UUCuuCGACGAcGACUUCGuga-ACGG- -5'
1850 3' -52.2 NC_001347.2 + 228386 0.66 0.988013
Target:  5'- ----uGCUGCgGCUGGcuGGCGCUgggcgcggugcUGCCc -3'
miRNA:   3'- uucuuCGACGaCGACU--UCGUGA-----------ACGG- -5'
1850 3' -52.2 NC_001347.2 + 229670 0.66 0.986419
Target:  5'- cGGGAGGCgGCUGUgcgcuccagUGGuacGCGCcUGCCg -3'
miRNA:   3'- -UUCUUCGaCGACG---------ACUu--CGUGaACGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.