miRNA display CGI


Results 1 - 20 of 150 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1850 5' -58.1 NC_001347.2 + 37637 0.66 0.897959
Target:  5'- --cGCUGCgucgguuucUGCGCgGCGACAGCuGCu -3'
miRNA:   3'- cgcCGACGa--------GCGCGgCGUUGUCGuUG- -5'
1850 5' -58.1 NC_001347.2 + 103628 0.66 0.897959
Target:  5'- cGCGGUUGCUCGaguaccgGCgCGUggUGGCuuACg -3'
miRNA:   3'- -CGCCGACGAGCg------CG-GCGuuGUCGu-UG- -5'
1850 5' -58.1 NC_001347.2 + 11230 0.66 0.897959
Target:  5'- gGUGGUUGCUgGUGCaGUuGCAGUAGa -3'
miRNA:   3'- -CGCCGACGAgCGCGgCGuUGUCGUUg -5'
1850 5' -58.1 NC_001347.2 + 203733 0.66 0.897959
Target:  5'- cGUGGacguUGUUCGUgGCCuGCAACGGCGugGCu -3'
miRNA:   3'- -CGCCg---ACGAGCG-CGG-CGUUGUCGU--UG- -5'
1850 5' -58.1 NC_001347.2 + 167524 0.66 0.897959
Target:  5'- aGCGGCgGC-CGacccCGCCGUuGCGGCcGCc -3'
miRNA:   3'- -CGCCGaCGaGC----GCGGCGuUGUCGuUG- -5'
1850 5' -58.1 NC_001347.2 + 229529 0.66 0.891564
Target:  5'- aGCcaGCUGCgugUCGC-CCGCGGCacacgGGCGACg -3'
miRNA:   3'- -CGc-CGACG---AGCGcGGCGUUG-----UCGUUG- -5'
1850 5' -58.1 NC_001347.2 + 165097 0.66 0.891564
Target:  5'- uGCGGCgaugGCUCGCcgGCCGUGuacACGuGCGu- -3'
miRNA:   3'- -CGCCGa---CGAGCG--CGGCGU---UGU-CGUug -5'
1850 5' -58.1 NC_001347.2 + 67613 0.66 0.884955
Target:  5'- aGCGGUUGggCGCGuuGaucuaggccCAAgAGCAGCu -3'
miRNA:   3'- -CGCCGACgaGCGCggC---------GUUgUCGUUG- -5'
1850 5' -58.1 NC_001347.2 + 129984 0.66 0.884955
Target:  5'- uGCaGGCUGaggUCGCGCgGCA--GGCAGg -3'
miRNA:   3'- -CG-CCGACg--AGCGCGgCGUugUCGUUg -5'
1850 5' -58.1 NC_001347.2 + 62603 0.66 0.884955
Target:  5'- aGCcGUUGCaCGCGUCGCGGCGuauGCAAg -3'
miRNA:   3'- -CGcCGACGaGCGCGGCGUUGU---CGUUg -5'
1850 5' -58.1 NC_001347.2 + 147571 0.66 0.884955
Target:  5'- gGUGGUgGCg-GUGgUGCAGCGGCGGCu -3'
miRNA:   3'- -CGCCGaCGagCGCgGCGUUGUCGUUG- -5'
1850 5' -58.1 NC_001347.2 + 33271 0.66 0.884955
Target:  5'- --cGCUGCgacacggggaCGCGCCGCAggaucGCAcGCGGCu -3'
miRNA:   3'- cgcCGACGa---------GCGCGGCGU-----UGU-CGUUG- -5'
1850 5' -58.1 NC_001347.2 + 154208 0.66 0.878135
Target:  5'- gGCGGauCUGCUCGUgcaGCCGCuugaAGUAAg -3'
miRNA:   3'- -CGCC--GACGAGCG---CGGCGuug-UCGUUg -5'
1850 5' -58.1 NC_001347.2 + 32735 0.66 0.878135
Target:  5'- cGUGGCcgGCgUgGCGgC-CGACGGCAGCg -3'
miRNA:   3'- -CGCCGa-CG-AgCGCgGcGUUGUCGUUG- -5'
1850 5' -58.1 NC_001347.2 + 21470 0.66 0.878135
Target:  5'- aGCcGCUGCgcCGCGCCGCcguccucgaAGCGcCAGCg -3'
miRNA:   3'- -CGcCGACGa-GCGCGGCG---------UUGUcGUUG- -5'
1850 5' -58.1 NC_001347.2 + 61780 0.66 0.878135
Target:  5'- aGCGGUccagcUGUUCGUGCaacuGCu-CGGCGGCg -3'
miRNA:   3'- -CGCCG-----ACGAGCGCGg---CGuuGUCGUUG- -5'
1850 5' -58.1 NC_001347.2 + 143385 0.66 0.877442
Target:  5'- cGCGGCgccaUGCUCgcccaggagacagGCGCCGUAGCucauuuGCGc- -3'
miRNA:   3'- -CGCCG----ACGAG-------------CGCGGCGUUGu-----CGUug -5'
1850 5' -58.1 NC_001347.2 + 213412 0.66 0.876049
Target:  5'- -gGGCgagGCggCGCGuCUGCAcuuuaccauguucgACAGCGGCg -3'
miRNA:   3'- cgCCGa--CGa-GCGC-GGCGU--------------UGUCGUUG- -5'
1850 5' -58.1 NC_001347.2 + 92824 0.66 0.87111
Target:  5'- cGCGcGCgUGCgugCGCGCgCGUGAC-GUAACa -3'
miRNA:   3'- -CGC-CG-ACGa--GCGCG-GCGUUGuCGUUG- -5'
1850 5' -58.1 NC_001347.2 + 199691 0.66 0.87111
Target:  5'- gGCGGCuuccUGCggcCG-GCCGCGGugcCGGCGGCu -3'
miRNA:   3'- -CGCCG----ACGa--GCgCGGCGUU---GUCGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.