miRNA display CGI


Results 1 - 20 of 23 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18500 3' -52.1 NC_004681.1 + 19706 0.66 0.920718
Target:  5'- uCAUcGACcACg----CCGCAGCGCGCc -3'
miRNA:   3'- -GUGuCUGuUGaagaaGGCGUCGCGUG- -5'
18500 3' -52.1 NC_004681.1 + 18383 0.66 0.914487
Target:  5'- gGCAGGCcaGGCggCggCCGCGGCgGCAa -3'
miRNA:   3'- gUGUCUG--UUGaaGaaGGCGUCG-CGUg -5'
18500 3' -52.1 NC_004681.1 + 58767 0.66 0.901184
Target:  5'- cCAuCAGGCAGgUguggcCCGCGGCGCAg -3'
miRNA:   3'- -GU-GUCUGUUgAagaa-GGCGUCGCGUg -5'
18500 3' -52.1 NC_004681.1 + 8281 0.66 0.894117
Target:  5'- --aGGGCuucCUUCUucUCCGCGGCGguCu -3'
miRNA:   3'- gugUCUGuu-GAAGA--AGGCGUCGCguG- -5'
18500 3' -52.1 NC_004681.1 + 59662 0.66 0.894117
Target:  5'- aGCGGugGGCUUCcagCCaacaugGCAGCGC-Cg -3'
miRNA:   3'- gUGUCugUUGAAGaa-GG------CGUCGCGuG- -5'
18500 3' -52.1 NC_004681.1 + 73123 0.66 0.894117
Target:  5'- --aGGAUGAgUUCUacUCCGgGGCGUACu -3'
miRNA:   3'- gugUCUGUUgAAGA--AGGCgUCGCGUG- -5'
18500 3' -52.1 NC_004681.1 + 36121 0.66 0.886029
Target:  5'- gCGCGGGCAaucuugcgccgccACUucucgUCUUCgGUuucGGCGCACa -3'
miRNA:   3'- -GUGUCUGU-------------UGA-----AGAAGgCG---UCGCGUG- -5'
18500 3' -52.1 NC_004681.1 + 63797 0.67 0.863184
Target:  5'- uGC-GACcauGACgag-UCCGCGGCGCACc -3'
miRNA:   3'- gUGuCUG---UUGaagaAGGCGUCGCGUG- -5'
18500 3' -52.1 NC_004681.1 + 75246 0.67 0.854816
Target:  5'- cCACGGGCAACa-CUuaCGUAGCGCuCa -3'
miRNA:   3'- -GUGUCUGUUGaaGAagGCGUCGCGuG- -5'
18500 3' -52.1 NC_004681.1 + 46332 0.67 0.845335
Target:  5'- -gUAGACGaagucugGCUUC-UCCGCAGCGaucuCACg -3'
miRNA:   3'- guGUCUGU-------UGAAGaAGGCGUCGC----GUG- -5'
18500 3' -52.1 NC_004681.1 + 61755 0.68 0.828312
Target:  5'- cCGCGG-CGGCggCUUCUGC-GCGCAg -3'
miRNA:   3'- -GUGUCuGUUGaaGAAGGCGuCGCGUg -5'
18500 3' -52.1 NC_004681.1 + 9290 0.68 0.819041
Target:  5'- gGCGG-CAACUUCUUCgGCAaCGCcuACg -3'
miRNA:   3'- gUGUCuGUUGAAGAAGgCGUcGCG--UG- -5'
18500 3' -52.1 NC_004681.1 + 9606 0.68 0.809569
Target:  5'- aGCAGGCcgaGGCgcUCUUCgGC-GCGCACg -3'
miRNA:   3'- gUGUCUG---UUGa-AGAAGgCGuCGCGUG- -5'
18500 3' -52.1 NC_004681.1 + 22632 0.68 0.799906
Target:  5'- cCGCGGGCAGCg----CCGC-GCGCAa -3'
miRNA:   3'- -GUGUCUGUUGaagaaGGCGuCGCGUg -5'
18500 3' -52.1 NC_004681.1 + 39350 0.69 0.769883
Target:  5'- aCGCGG-CGGCccuuggcgccCUUgCCGCGGCGCACg -3'
miRNA:   3'- -GUGUCuGUUGaa--------GAA-GGCGUCGCGUG- -5'
18500 3' -52.1 NC_004681.1 + 39110 0.71 0.680975
Target:  5'- gCGCGGGCAACacCUUCCGCgaccgccgcgacaaGGCGCuCa -3'
miRNA:   3'- -GUGUCUGUUGaaGAAGGCG--------------UCGCGuG- -5'
18500 3' -52.1 NC_004681.1 + 16070 0.71 0.672125
Target:  5'- aCGCAGACugccgcccucgguGGCgUCaccaCCGCGGCGCGCa -3'
miRNA:   3'- -GUGUCUG-------------UUGaAGaa--GGCGUCGCGUG- -5'
18500 3' -52.1 NC_004681.1 + 11839 0.71 0.661029
Target:  5'- gACGGACGACaccaagaUUUggcagUCGCGGCGCGCg -3'
miRNA:   3'- gUGUCUGUUG-------AAGaa---GGCGUCGCGUG- -5'
18500 3' -52.1 NC_004681.1 + 34563 0.71 0.651019
Target:  5'- uCGguGugGACUUCUUCgGCuuGUGCGCc -3'
miRNA:   3'- -GUguCugUUGAAGAAGgCGu-CGCGUG- -5'
18500 3' -52.1 NC_004681.1 + 41900 0.71 0.651019
Target:  5'- gGgAGGCGGCgUCUUCCacuGCGGCGCGa -3'
miRNA:   3'- gUgUCUGUUGaAGAAGG---CGUCGCGUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.