miRNA display CGI


Results 1 - 20 of 35 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18500 5' -60.1 NC_004681.1 + 41152 0.66 0.596199
Target:  5'- cGGCGGcGCCGaaGAGGgc--CGUCGCa -3'
miRNA:   3'- uCCGCC-CGGCg-CUCCaguaGCAGUGg -5'
18500 5' -60.1 NC_004681.1 + 65006 0.66 0.596199
Target:  5'- cAGGCGGgcGCCGCGGGagagaugccaGUCAUUcagCAUCa -3'
miRNA:   3'- -UCCGCC--CGGCGCUC----------CAGUAGca-GUGG- -5'
18500 5' -60.1 NC_004681.1 + 52255 0.66 0.596199
Target:  5'- uGGCgacucucuGGGCCGCGAcgcGGaCGUUGUCcuCCu -3'
miRNA:   3'- uCCG--------CCCGGCGCU---CCaGUAGCAGu-GG- -5'
18500 5' -60.1 NC_004681.1 + 1431 0.66 0.585916
Target:  5'- cGGCcauuGGcGCCGCGggcgGGGUCAUCaaGUCcCCc -3'
miRNA:   3'- uCCG----CC-CGGCGC----UCCAGUAG--CAGuGG- -5'
18500 5' -60.1 NC_004681.1 + 9396 0.66 0.575666
Target:  5'- uGGUGGGCCacuucGCGccuucGGUCAUCcagaccgcUCGCCg -3'
miRNA:   3'- uCCGCCCGG-----CGCu----CCAGUAGc-------AGUGG- -5'
18500 5' -60.1 NC_004681.1 + 72024 0.66 0.575666
Target:  5'- cGGCaauccGGCCGaUGAGGaCAUCGUCGg- -3'
miRNA:   3'- uCCGc----CCGGC-GCUCCaGUAGCAGUgg -5'
18500 5' -60.1 NC_004681.1 + 18390 0.66 0.574643
Target:  5'- cAGGCGgcGGCCGCGGcGG-CAaacgccuUCG-CACCc -3'
miRNA:   3'- -UCCGC--CCGGCGCU-CCaGU-------AGCaGUGG- -5'
18500 5' -60.1 NC_004681.1 + 16196 0.66 0.565458
Target:  5'- uGGCGGcugugcgcGCCGCGGuGGUgA-CGcCACCg -3'
miRNA:   3'- uCCGCC--------CGGCGCU-CCAgUaGCaGUGG- -5'
18500 5' -60.1 NC_004681.1 + 63694 0.66 0.565458
Target:  5'- uGGUGcGCCGCGGacucGUCAUgGUCGCa -3'
miRNA:   3'- uCCGCcCGGCGCUc---CAGUAgCAGUGg -5'
18500 5' -60.1 NC_004681.1 + 39999 0.66 0.565458
Target:  5'- cAGGCuGGCCGCGcgcuggGGGUCucCGccCGCCu -3'
miRNA:   3'- -UCCGcCCGGCGC------UCCAGuaGCa-GUGG- -5'
18500 5' -60.1 NC_004681.1 + 23463 0.66 0.555297
Target:  5'- gAGGCGGGCaG-GAGGUUGaccaccUCGggCGCCu -3'
miRNA:   3'- -UCCGCCCGgCgCUCCAGU------AGCa-GUGG- -5'
18500 5' -60.1 NC_004681.1 + 31993 0.66 0.555297
Target:  5'- uGGCGGccGCCGCGAGGUaGUag-UACUg -3'
miRNA:   3'- uCCGCC--CGGCGCUCCAgUAgcaGUGG- -5'
18500 5' -60.1 NC_004681.1 + 1417 0.66 0.554283
Target:  5'- gAGGCa-GCCcuugucgGCGAGGUCGUCG--GCCa -3'
miRNA:   3'- -UCCGccCGG-------CGCUCCAGUAGCagUGG- -5'
18500 5' -60.1 NC_004681.1 + 61309 0.67 0.539154
Target:  5'- cGGCGGcGUCGCGccagauGGUgCAgcggaggaauguggCGUCGCCg -3'
miRNA:   3'- uCCGCC-CGGCGCu-----CCA-GUa-------------GCAGUGG- -5'
18500 5' -60.1 NC_004681.1 + 69009 0.67 0.523175
Target:  5'- uGGCGGcgGCCGUGAcgauGGUCAgcgccucgauggCGUCgGCCg -3'
miRNA:   3'- uCCGCC--CGGCGCU----CCAGUa-----------GCAG-UGG- -5'
18500 5' -60.1 NC_004681.1 + 13011 0.67 0.515253
Target:  5'- cGGaCGacguGGCCGCGAcugacacuGUCAUCGcCGCCa -3'
miRNA:   3'- uCC-GC----CCGGCGCUc-------CAGUAGCaGUGG- -5'
18500 5' -60.1 NC_004681.1 + 60171 0.67 0.505421
Target:  5'- aAGGCugcuGGuGCugagCGCGAGGUgAUCGgCACCc -3'
miRNA:   3'- -UCCG----CC-CG----GCGCUCCAgUAGCaGUGG- -5'
18500 5' -60.1 NC_004681.1 + 8753 0.67 0.494699
Target:  5'- cGGGCuggugacGGGCCGCGAggaaaucaGGUCcgCGagGCUc -3'
miRNA:   3'- -UCCG-------CCCGGCGCU--------CCAGuaGCagUGG- -5'
18500 5' -60.1 NC_004681.1 + 49595 0.69 0.42109
Target:  5'- cAGGCGGGCCaaGaAGGcgcagauuccCGUCGUCGuCCg -3'
miRNA:   3'- -UCCGCCCGGcgC-UCCa---------GUAGCAGU-GG- -5'
18500 5' -60.1 NC_004681.1 + 54752 0.69 0.412248
Target:  5'- cAGGCc--CC-CGAGGUCAUCGUCAUg -3'
miRNA:   3'- -UCCGcccGGcGCUCCAGUAGCAGUGg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.