Results 1 - 20 of 35 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18500 | 5' | -60.1 | NC_004681.1 | + | 846 | 0.7 | 0.361689 |
Target: 5'- cGGCaGGGCCGgGuAGGc---CGUCACCa -3' miRNA: 3'- uCCG-CCCGGCgC-UCCaguaGCAGUGG- -5' |
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18500 | 5' | -60.1 | NC_004681.1 | + | 1417 | 0.66 | 0.554283 |
Target: 5'- gAGGCa-GCCcuugucgGCGAGGUCGUCG--GCCa -3' miRNA: 3'- -UCCGccCGG-------CGCUCCAGUAGCagUGG- -5' |
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18500 | 5' | -60.1 | NC_004681.1 | + | 1431 | 0.66 | 0.585916 |
Target: 5'- cGGCcauuGGcGCCGCGggcgGGGUCAUCaaGUCcCCc -3' miRNA: 3'- uCCG----CC-CGGCGC----UCCAGUAG--CAGuGG- -5' |
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18500 | 5' | -60.1 | NC_004681.1 | + | 8623 | 0.7 | 0.345822 |
Target: 5'- uGGCcgauGGCCGCGGGGgcgGUC-UCACCg -3' miRNA: 3'- uCCGc---CCGGCGCUCCag-UAGcAGUGG- -5' |
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18500 | 5' | -60.1 | NC_004681.1 | + | 8753 | 0.67 | 0.494699 |
Target: 5'- cGGGCuggugacGGGCCGCGAggaaaucaGGUCcgCGagGCUc -3' miRNA: 3'- -UCCG-------CCCGGCGCU--------CCAGuaGCagUGG- -5' |
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18500 | 5' | -60.1 | NC_004681.1 | + | 9396 | 0.66 | 0.575666 |
Target: 5'- uGGUGGGCCacuucGCGccuucGGUCAUCcagaccgcUCGCCg -3' miRNA: 3'- uCCGCCCGG-----CGCu----CCAGUAGc-------AGUGG- -5' |
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18500 | 5' | -60.1 | NC_004681.1 | + | 11610 | 0.69 | 0.394912 |
Target: 5'- -aGCGGGCCGUGuAGcacUCuucuguGUCGUCGCCg -3' miRNA: 3'- ucCGCCCGGCGC-UCc--AG------UAGCAGUGG- -5' |
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18500 | 5' | -60.1 | NC_004681.1 | + | 12547 | 0.73 | 0.237078 |
Target: 5'- uGGCcgGGGCCuCGAcGGUgAUCGUCACUu -3' miRNA: 3'- uCCG--CCCGGcGCU-CCAgUAGCAGUGG- -5' |
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18500 | 5' | -60.1 | NC_004681.1 | + | 13011 | 0.67 | 0.515253 |
Target: 5'- cGGaCGacguGGCCGCGAcugacacuGUCAUCGcCGCCa -3' miRNA: 3'- uCC-GC----CCGGCGCUc-------CAGUAGCaGUGG- -5' |
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18500 | 5' | -60.1 | NC_004681.1 | + | 15886 | 0.71 | 0.32297 |
Target: 5'- uGGC-GGCCGCGuGGGUCAcCGugaagaUCGCCg -3' miRNA: 3'- uCCGcCCGGCGC-UCCAGUaGC------AGUGG- -5' |
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18500 | 5' | -60.1 | NC_004681.1 | + | 16196 | 0.66 | 0.565458 |
Target: 5'- uGGCGGcugugcgcGCCGCGGuGGUgA-CGcCACCg -3' miRNA: 3'- uCCGCC--------CGGCGCU-CCAgUaGCaGUGG- -5' |
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18500 | 5' | -60.1 | NC_004681.1 | + | 17397 | 0.69 | 0.394058 |
Target: 5'- -cGCGGGCaCGCGcgccagcAGGgCGUCGUCuCCg -3' miRNA: 3'- ucCGCCCG-GCGC-------UCCaGUAGCAGuGG- -5' |
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18500 | 5' | -60.1 | NC_004681.1 | + | 18390 | 0.66 | 0.574643 |
Target: 5'- cAGGCGgcGGCCGCGGcGG-CAaacgccuUCG-CACCc -3' miRNA: 3'- -UCCGC--CCGGCGCU-CCaGU-------AGCaGUGG- -5' |
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18500 | 5' | -60.1 | NC_004681.1 | + | 18736 | 0.7 | 0.361689 |
Target: 5'- aGGGCGacGGCgGCGAGGcCGcgCGUgaCACCg -3' miRNA: 3'- -UCCGC--CCGgCGCUCCaGUa-GCA--GUGG- -5' |
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18500 | 5' | -60.1 | NC_004681.1 | + | 23463 | 0.66 | 0.555297 |
Target: 5'- gAGGCGGGCaG-GAGGUUGaccaccUCGggCGCCu -3' miRNA: 3'- -UCCGCCCGgCgCUCCAGU------AGCa-GUGG- -5' |
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18500 | 5' | -60.1 | NC_004681.1 | + | 23769 | 0.69 | 0.386423 |
Target: 5'- gAGGCGGGCgCGUagGAGGcCAgcUCGaugggcUCACCc -3' miRNA: 3'- -UCCGCCCG-GCG--CUCCaGU--AGC------AGUGG- -5' |
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18500 | 5' | -60.1 | NC_004681.1 | + | 24751 | 0.76 | 0.142888 |
Target: 5'- cGGGCGGGuuGuCGGGGUCcgcgguGUUGUCGCg -3' miRNA: 3'- -UCCGCCCggC-GCUCCAG------UAGCAGUGg -5' |
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18500 | 5' | -60.1 | NC_004681.1 | + | 31993 | 0.66 | 0.555297 |
Target: 5'- uGGCGGccGCCGCGAGGUaGUag-UACUg -3' miRNA: 3'- uCCGCC--CGGCGCUCCAgUAgcaGUGG- -5' |
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18500 | 5' | -60.1 | NC_004681.1 | + | 39999 | 0.66 | 0.565458 |
Target: 5'- cAGGCuGGCCGCGcgcuggGGGUCucCGccCGCCu -3' miRNA: 3'- -UCCGcCCGGCGC------UCCAGuaGCa-GUGG- -5' |
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18500 | 5' | -60.1 | NC_004681.1 | + | 40568 | 0.69 | 0.403521 |
Target: 5'- cGGCGucGGCCGCGGcguucaauGUCAUCGgcCGCCu -3' miRNA: 3'- uCCGC--CCGGCGCUc-------CAGUAGCa-GUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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