miRNA display CGI


Results 21 - 35 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18500 5' -60.1 NC_004681.1 + 41152 0.66 0.596199
Target:  5'- cGGCGGcGCCGaaGAGGgc--CGUCGCa -3'
miRNA:   3'- uCCGCC-CGGCg-CUCCaguaGCAGUGg -5'
18500 5' -60.1 NC_004681.1 + 43758 0.69 0.394912
Target:  5'- cGGCGGGCUgaaggGCGAGGUa--CGaaGCCa -3'
miRNA:   3'- uCCGCCCGG-----CGCUCCAguaGCagUGG- -5'
18500 5' -60.1 NC_004681.1 + 46930 0.69 0.412248
Target:  5'- gGGGCGGuuGCCGCGGGGcugCGucUCGUagCGCUc -3'
miRNA:   3'- -UCCGCC--CGGCGCUCCa--GU--AGCA--GUGG- -5'
18500 5' -60.1 NC_004681.1 + 49595 0.69 0.42109
Target:  5'- cAGGCGGGCCaaGaAGGcgcagauuccCGUCGUCGuCCg -3'
miRNA:   3'- -UCCGCCCGGcgC-UCCa---------GUAGCAGU-GG- -5'
18500 5' -60.1 NC_004681.1 + 52255 0.66 0.596199
Target:  5'- uGGCgacucucuGGGCCGCGAcgcGGaCGUUGUCcuCCu -3'
miRNA:   3'- uCCG--------CCCGGCGCU---CCaGUAGCAGu-GG- -5'
18500 5' -60.1 NC_004681.1 + 54752 0.69 0.412248
Target:  5'- cAGGCc--CC-CGAGGUCAUCGUCAUg -3'
miRNA:   3'- -UCCGcccGGcGCUCCAGUAGCAGUGg -5'
18500 5' -60.1 NC_004681.1 + 56432 1.1 0.000483
Target:  5'- gAGGCGGGCCGCGAGGUCAUCGUCACCc -3'
miRNA:   3'- -UCCGCCCGGCGCUCCAGUAGCAGUGG- -5'
18500 5' -60.1 NC_004681.1 + 60171 0.67 0.505421
Target:  5'- aAGGCugcuGGuGCugagCGCGAGGUgAUCGgCACCc -3'
miRNA:   3'- -UCCG----CC-CG----GCGCUCCAgUAGCaGUGG- -5'
18500 5' -60.1 NC_004681.1 + 61309 0.67 0.539154
Target:  5'- cGGCGGcGUCGCGccagauGGUgCAgcggaggaauguggCGUCGCCg -3'
miRNA:   3'- uCCGCC-CGGCGCu-----CCA-GUa-------------GCAGUGG- -5'
18500 5' -60.1 NC_004681.1 + 61580 0.69 0.378056
Target:  5'- aGGGCGGuuuucCUGgGGGGUCAgaacggaacgUCGUCAUCg -3'
miRNA:   3'- -UCCGCCc----GGCgCUCCAGU----------AGCAGUGG- -5'
18500 5' -60.1 NC_004681.1 + 63281 0.74 0.20951
Target:  5'- cGGaagaaGGGCCGCGAuaucgccucGGUgaUGUCGUCGCCu -3'
miRNA:   3'- uCCg----CCCGGCGCU---------CCA--GUAGCAGUGG- -5'
18500 5' -60.1 NC_004681.1 + 63694 0.66 0.565458
Target:  5'- uGGUGcGCCGCGGacucGUCAUgGUCGCa -3'
miRNA:   3'- uCCGCcCGGCGCUc---CAGUAgCAGUGg -5'
18500 5' -60.1 NC_004681.1 + 65006 0.66 0.596199
Target:  5'- cAGGCGGgcGCCGCGGGagagaugccaGUCAUUcagCAUCa -3'
miRNA:   3'- -UCCGCC--CGGCGCUC----------CAGUAGca-GUGG- -5'
18500 5' -60.1 NC_004681.1 + 69009 0.67 0.523175
Target:  5'- uGGCGGcgGCCGUGAcgauGGUCAgcgccucgauggCGUCgGCCg -3'
miRNA:   3'- uCCGCC--CGGCGCU----CCAGUa-----------GCAG-UGG- -5'
18500 5' -60.1 NC_004681.1 + 72024 0.66 0.575666
Target:  5'- cGGCaauccGGCCGaUGAGGaCAUCGUCGg- -3'
miRNA:   3'- uCCGc----CCGGC-GCUCCaGUAGCAGUgg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.