miRNA display CGI


Results 1 - 20 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18500 5' -60.1 NC_004681.1 + 56432 1.1 0.000483
Target:  5'- gAGGCGGGCCGCGAGGUCAUCGUCACCc -3'
miRNA:   3'- -UCCGCCCGGCGCUCCAGUAGCAGUGG- -5'
18500 5' -60.1 NC_004681.1 + 52255 0.66 0.596199
Target:  5'- uGGCgacucucuGGGCCGCGAcgcGGaCGUUGUCcuCCu -3'
miRNA:   3'- uCCG--------CCCGGCGCU---CCaGUAGCAGu-GG- -5'
18500 5' -60.1 NC_004681.1 + 1431 0.66 0.585916
Target:  5'- cGGCcauuGGcGCCGCGggcgGGGUCAUCaaGUCcCCc -3'
miRNA:   3'- uCCG----CC-CGGCGC----UCCAGUAG--CAGuGG- -5'
18500 5' -60.1 NC_004681.1 + 9396 0.66 0.575666
Target:  5'- uGGUGGGCCacuucGCGccuucGGUCAUCcagaccgcUCGCCg -3'
miRNA:   3'- uCCGCCCGG-----CGCu----CCAGUAGc-------AGUGG- -5'
18500 5' -60.1 NC_004681.1 + 18390 0.66 0.574643
Target:  5'- cAGGCGgcGGCCGCGGcGG-CAaacgccuUCG-CACCc -3'
miRNA:   3'- -UCCGC--CCGGCGCU-CCaGU-------AGCaGUGG- -5'
18500 5' -60.1 NC_004681.1 + 63694 0.66 0.565458
Target:  5'- uGGUGcGCCGCGGacucGUCAUgGUCGCa -3'
miRNA:   3'- uCCGCcCGGCGCUc---CAGUAgCAGUGg -5'
18500 5' -60.1 NC_004681.1 + 13011 0.67 0.515253
Target:  5'- cGGaCGacguGGCCGCGAcugacacuGUCAUCGcCGCCa -3'
miRNA:   3'- uCC-GC----CCGGCGCUc-------CAGUAGCaGUGG- -5'
18500 5' -60.1 NC_004681.1 + 60171 0.67 0.505421
Target:  5'- aAGGCugcuGGuGCugagCGCGAGGUgAUCGgCACCc -3'
miRNA:   3'- -UCCG----CC-CG----GCGCUCCAgUAGCaGUGG- -5'
18500 5' -60.1 NC_004681.1 + 49595 0.69 0.42109
Target:  5'- cAGGCGGGCCaaGaAGGcgcagauuccCGUCGUCGuCCg -3'
miRNA:   3'- -UCCGCCCGGcgC-UCCa---------GUAGCAGU-GG- -5'
18500 5' -60.1 NC_004681.1 + 54752 0.69 0.412248
Target:  5'- cAGGCc--CC-CGAGGUCAUCGUCAUg -3'
miRNA:   3'- -UCCGcccGGcGCUCCAGUAGCAGUGg -5'
18500 5' -60.1 NC_004681.1 + 18736 0.7 0.361689
Target:  5'- aGGGCGacGGCgGCGAGGcCGcgCGUgaCACCg -3'
miRNA:   3'- -UCCGC--CCGgCGCUCCaGUa-GCA--GUGG- -5'
18500 5' -60.1 NC_004681.1 + 15886 0.71 0.32297
Target:  5'- uGGC-GGCCGCGuGGGUCAcCGugaagaUCGCCg -3'
miRNA:   3'- uCCGcCCGGCGC-UCCAGUaGC------AGUGG- -5'
18500 5' -60.1 NC_004681.1 + 63281 0.74 0.20951
Target:  5'- cGGaagaaGGGCCGCGAuaucgccucGGUgaUGUCGUCGCCu -3'
miRNA:   3'- uCCg----CCCGGCGCU---------CCA--GUAGCAGUGG- -5'
18500 5' -60.1 NC_004681.1 + 17397 0.69 0.394058
Target:  5'- -cGCGGGCaCGCGcgccagcAGGgCGUCGUCuCCg -3'
miRNA:   3'- ucCGCCCG-GCGC-------UCCaGUAGCAGuGG- -5'
18500 5' -60.1 NC_004681.1 + 23769 0.69 0.386423
Target:  5'- gAGGCGGGCgCGUagGAGGcCAgcUCGaugggcUCACCc -3'
miRNA:   3'- -UCCGCCCG-GCG--CUCCaGU--AGC------AGUGG- -5'
18500 5' -60.1 NC_004681.1 + 61580 0.69 0.378056
Target:  5'- aGGGCGGuuuucCUGgGGGGUCAgaacggaacgUCGUCAUCg -3'
miRNA:   3'- -UCCGCCc----GGCgCUCCAGU----------AGCAGUGG- -5'
18500 5' -60.1 NC_004681.1 + 846 0.7 0.361689
Target:  5'- cGGCaGGGCCGgGuAGGc---CGUCACCa -3'
miRNA:   3'- uCCG-CCCGGCgC-UCCaguaGCAGUGG- -5'
18500 5' -60.1 NC_004681.1 + 8623 0.7 0.345822
Target:  5'- uGGCcgauGGCCGCGGGGgcgGUC-UCACCg -3'
miRNA:   3'- uCCGc---CCGGCGCUCCag-UAGcAGUGG- -5'
18500 5' -60.1 NC_004681.1 + 12547 0.73 0.237078
Target:  5'- uGGCcgGGGCCuCGAcGGUgAUCGUCACUu -3'
miRNA:   3'- uCCG--CCCGGcGCU-CCAgUAGCAGUGG- -5'
18500 5' -60.1 NC_004681.1 + 65006 0.66 0.596199
Target:  5'- cAGGCGGgcGCCGCGGGagagaugccaGUCAUUcagCAUCa -3'
miRNA:   3'- -UCCGCC--CGGCGCUC----------CAGUAGca-GUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.