Results 21 - 35 of 35 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18500 | 5' | -60.1 | NC_004681.1 | + | 72024 | 0.66 | 0.575666 |
Target: 5'- cGGCaauccGGCCGaUGAGGaCAUCGUCGg- -3' miRNA: 3'- uCCGc----CCGGC-GCUCCaGUAGCAGUgg -5' |
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18500 | 5' | -60.1 | NC_004681.1 | + | 41152 | 0.66 | 0.596199 |
Target: 5'- cGGCGGcGCCGaaGAGGgc--CGUCGCa -3' miRNA: 3'- uCCGCC-CGGCg-CUCCaguaGCAGUGg -5' |
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18500 | 5' | -60.1 | NC_004681.1 | + | 8753 | 0.67 | 0.494699 |
Target: 5'- cGGGCuggugacGGGCCGCGAggaaaucaGGUCcgCGagGCUc -3' miRNA: 3'- -UCCG-------CCCGGCGCU--------CCAGuaGCagUGG- -5' |
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18500 | 5' | -60.1 | NC_004681.1 | + | 46930 | 0.69 | 0.412248 |
Target: 5'- gGGGCGGuuGCCGCGGGGcugCGucUCGUagCGCUc -3' miRNA: 3'- -UCCGCC--CGGCGCUCCa--GU--AGCA--GUGG- -5' |
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18500 | 5' | -60.1 | NC_004681.1 | + | 40568 | 0.69 | 0.403521 |
Target: 5'- cGGCGucGGCCGCGGcguucaauGUCAUCGgcCGCCu -3' miRNA: 3'- uCCGC--CCGGCGCUc-------CAGUAGCa-GUGG- -5' |
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18500 | 5' | -60.1 | NC_004681.1 | + | 24751 | 0.76 | 0.142888 |
Target: 5'- cGGGCGGGuuGuCGGGGUCcgcgguGUUGUCGCg -3' miRNA: 3'- -UCCGCCCggC-GCUCCAG------UAGCAGUGg -5' |
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18500 | 5' | -60.1 | NC_004681.1 | + | 12547 | 0.73 | 0.237078 |
Target: 5'- uGGCcgGGGCCuCGAcGGUgAUCGUCACUu -3' miRNA: 3'- uCCG--CCCGGcGCU-CCAgUAGCAGUGG- -5' |
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18500 | 5' | -60.1 | NC_004681.1 | + | 8623 | 0.7 | 0.345822 |
Target: 5'- uGGCcgauGGCCGCGGGGgcgGUC-UCACCg -3' miRNA: 3'- uCCGc---CCGGCGCUCCag-UAGcAGUGG- -5' |
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18500 | 5' | -60.1 | NC_004681.1 | + | 846 | 0.7 | 0.361689 |
Target: 5'- cGGCaGGGCCGgGuAGGc---CGUCACCa -3' miRNA: 3'- uCCG-CCCGGCgC-UCCaguaGCAGUGG- -5' |
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18500 | 5' | -60.1 | NC_004681.1 | + | 61580 | 0.69 | 0.378056 |
Target: 5'- aGGGCGGuuuucCUGgGGGGUCAgaacggaacgUCGUCAUCg -3' miRNA: 3'- -UCCGCCc----GGCgCUCCAGU----------AGCAGUGG- -5' |
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18500 | 5' | -60.1 | NC_004681.1 | + | 23769 | 0.69 | 0.386423 |
Target: 5'- gAGGCGGGCgCGUagGAGGcCAgcUCGaugggcUCACCc -3' miRNA: 3'- -UCCGCCCG-GCG--CUCCaGU--AGC------AGUGG- -5' |
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18500 | 5' | -60.1 | NC_004681.1 | + | 17397 | 0.69 | 0.394058 |
Target: 5'- -cGCGGGCaCGCGcgccagcAGGgCGUCGUCuCCg -3' miRNA: 3'- ucCGCCCG-GCGC-------UCCaGUAGCAGuGG- -5' |
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18500 | 5' | -60.1 | NC_004681.1 | + | 43758 | 0.69 | 0.394912 |
Target: 5'- cGGCGGGCUgaaggGCGAGGUa--CGaaGCCa -3' miRNA: 3'- uCCGCCCGG-----CGCUCCAguaGCagUGG- -5' |
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18500 | 5' | -60.1 | NC_004681.1 | + | 11610 | 0.69 | 0.394912 |
Target: 5'- -aGCGGGCCGUGuAGcacUCuucuguGUCGUCGCCg -3' miRNA: 3'- ucCGCCCGGCGC-UCc--AG------UAGCAGUGG- -5' |
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18500 | 5' | -60.1 | NC_004681.1 | + | 65006 | 0.66 | 0.596199 |
Target: 5'- cAGGCGGgcGCCGCGGGagagaugccaGUCAUUcagCAUCa -3' miRNA: 3'- -UCCGCC--CGGCGCUC----------CAGUAGca-GUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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