miRNA display CGI


Results 1 - 20 of 28 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18501 3' -64.5 NC_004681.1 + 18392 0.66 0.342783
Target:  5'- gGCGGCG-GCCGCGGcGGCaaacGCCUu -3'
miRNA:   3'- aUGCUGCaCGGCGCC-CCGcuc-CGGGu -5'
18501 3' -64.5 NC_004681.1 + 67355 0.66 0.335206
Target:  5'- -uCGGCGuUGCgGUGcGGCGGGGCCa- -3'
miRNA:   3'- auGCUGC-ACGgCGCcCCGCUCCGGgu -5'
18501 3' -64.5 NC_004681.1 + 12489 0.66 0.327753
Target:  5'- gACGAgCGUcGCCGCGGuGGUGGuGCCa- -3'
miRNA:   3'- aUGCU-GCA-CGGCGCC-CCGCUcCGGgu -5'
18501 3' -64.5 NC_004681.1 + 24839 0.66 0.320422
Target:  5'- -uCGGCGUcgGCgGCGcGGGCGGcGGCCg- -3'
miRNA:   3'- auGCUGCA--CGgCGC-CCCGCU-CCGGgu -5'
18501 3' -64.5 NC_004681.1 + 38226 0.67 0.306133
Target:  5'- --aGACGUcCCGCGGcGGCGccauAGGCaCCGu -3'
miRNA:   3'- augCUGCAcGGCGCC-CCGC----UCCG-GGU- -5'
18501 3' -64.5 NC_004681.1 + 69222 0.67 0.306133
Target:  5'- gGCGAgGgagGCCaggGCGcGGGCGAGGCg-- -3'
miRNA:   3'- aUGCUgCa--CGG---CGC-CCCGCUCCGggu -5'
18501 3' -64.5 NC_004681.1 + 32780 0.67 0.306133
Target:  5'- cGCGACGU-CgGCGGGGUacccgGAccacaugucGGCCCAg -3'
miRNA:   3'- aUGCUGCAcGgCGCCCCG-----CU---------CCGGGU- -5'
18501 3' -64.5 NC_004681.1 + 40570 0.68 0.2606
Target:  5'- gGCGGCGUcgGCCGCGGcguucaaugucaucGGCcgccucaagggcgccGAGGUCCAa -3'
miRNA:   3'- aUGCUGCA--CGGCGCC--------------CCG---------------CUCCGGGU- -5'
18501 3' -64.5 NC_004681.1 + 6381 0.68 0.259983
Target:  5'- gAUGGCGcUGUCGagGGGGagGAGGCCCc -3'
miRNA:   3'- aUGCUGC-ACGGCg-CCCCg-CUCCGGGu -5'
18501 3' -64.5 NC_004681.1 + 17642 0.68 0.259983
Target:  5'- aAgGGgGUGCCGCcaGGGaGCGuGGCCUg -3'
miRNA:   3'- aUgCUgCACGGCG--CCC-CGCuCCGGGu -5'
18501 3' -64.5 NC_004681.1 + 7451 0.68 0.253873
Target:  5'- -uUGGCGggaggcuucGCCGCGGcGGCGGGGUCa- -3'
miRNA:   3'- auGCUGCa--------CGGCGCC-CCGCUCCGGgu -5'
18501 3' -64.5 NC_004681.1 + 39214 0.68 0.247882
Target:  5'- cGCGGCG-GUCGCGGaaGGUGuuGCCCGc -3'
miRNA:   3'- aUGCUGCaCGGCGCC--CCGCucCGGGU- -5'
18501 3' -64.5 NC_004681.1 + 48691 0.68 0.236251
Target:  5'- gGCgGAUGccUGCCucuGCGaGGGCGuGGCCCAc -3'
miRNA:   3'- aUG-CUGC--ACGG---CGC-CCCGCuCCGGGU- -5'
18501 3' -64.5 NC_004681.1 + 28600 0.69 0.225081
Target:  5'- cGCgGGgGUGCC-CGGGGUGAGugugaGCCCAg -3'
miRNA:   3'- aUG-CUgCACGGcGCCCCGCUC-----CGGGU- -5'
18501 3' -64.5 NC_004681.1 + 30945 0.69 0.214363
Target:  5'- gGCGGCGUGCCGUccuccacgauggGuccGGGCagguAGGCCCAg -3'
miRNA:   3'- aUGCUGCACGGCG------------C---CCCGc---UCCGGGU- -5'
18501 3' -64.5 NC_004681.1 + 8746 0.69 0.20917
Target:  5'- -gUGACGgGCCGCGaGGaaaucagguccGCGAGGCUCAg -3'
miRNA:   3'- auGCUGCaCGGCGC-CC-----------CGCUCCGGGU- -5'
18501 3' -64.5 NC_004681.1 + 61727 0.69 0.20917
Target:  5'- gGCGAUG-GUCGCcucuuccaGGGCGGGGCUCAu -3'
miRNA:   3'- aUGCUGCaCGGCGc-------CCCGCUCCGGGU- -5'
18501 3' -64.5 NC_004681.1 + 18073 0.69 0.204085
Target:  5'- aGCGGgaGUgGCCGCauGGGcuGCGGGGCCCAc -3'
miRNA:   3'- aUGCUg-CA-CGGCG--CCC--CGCUCCGGGU- -5'
18501 3' -64.5 NC_004681.1 + 54397 0.7 0.184809
Target:  5'- gACgGAUGUGCCGCucuugagguGGGCGAGGaCCAg -3'
miRNA:   3'- aUG-CUGCACGGCGc--------CCCGCUCCgGGU- -5'
18501 3' -64.5 NC_004681.1 + 39879 0.71 0.167157
Target:  5'- gGCGAUG-GUCGCGcggcGGGCGAGGUCUu -3'
miRNA:   3'- aUGCUGCaCGGCGC----CCCGCUCCGGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.