Results 21 - 28 of 28 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
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| Predicted miRNA align pattern | |||||||
| 18501 | 3' | -64.5 | NC_004681.1 | + | 17721 | 0.71 | 0.167157 |
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Target: 5'- gUGCGACGUGaaCGCGGGGuCGuccGcGCCCGa -3' miRNA: 3'- -AUGCUGCACg-GCGCCCC-GCu--C-CGGGU- -5' |
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| 18501 | 3' | -64.5 | NC_004681.1 | + | 51104 | 0.71 | 0.154926 |
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Target: 5'- gACGACGgccucCCGUGGGGUGAagcagugaaGGCCCu -3' miRNA: 3'- aUGCUGCac---GGCGCCCCGCU---------CCGGGu -5' |
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| 18501 | 3' | -64.5 | NC_004681.1 | + | 10761 | 0.72 | 0.132869 |
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Target: 5'- cGCGACG-GCCGCGGGcaccgGGGGCgCCAg -3' miRNA: 3'- aUGCUGCaCGGCGCCCcg---CUCCG-GGU- -5' |
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| 18501 | 3' | -64.5 | NC_004681.1 | + | 18138 | 0.73 | 0.113739 |
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Target: 5'- cGCGGCGcUGCCGUGaGGCGuuGCCCGa -3' miRNA: 3'- aUGCUGC-ACGGCGCcCCGCucCGGGU- -5' |
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| 18501 | 3' | -64.5 | NC_004681.1 | + | 37766 | 0.76 | 0.068864 |
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Target: 5'- aGCGACGcgcgGCCGCu-GGCGAGGCCCc -3' miRNA: 3'- aUGCUGCa---CGGCGccCCGCUCCGGGu -5' |
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| 18501 | 3' | -64.5 | NC_004681.1 | + | 46717 | 0.76 | 0.067048 |
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Target: 5'- --gGGCGUG-UGCGGGGCGGGGUCCu -3' miRNA: 3'- augCUGCACgGCGCCCCGCUCCGGGu -5' |
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| 18501 | 3' | -64.5 | NC_004681.1 | + | 50391 | 0.77 | 0.05557 |
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Target: 5'- aGCGuCG-GCCGCGGGGaCGuGGCCCu -3' miRNA: 3'- aUGCuGCaCGGCGCCCC-GCuCCGGGu -5' |
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| 18501 | 3' | -64.5 | NC_004681.1 | + | 56758 | 1.05 | 0.00037 |
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Target: 5'- cUACGACGUGCCGCGGGGCGAGGCCCAc -3' miRNA: 3'- -AUGCUGCACGGCGCCCCGCUCCGGGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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