Results 21 - 28 of 28 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18501 | 3' | -64.5 | NC_004681.1 | + | 48691 | 0.68 | 0.236251 |
Target: 5'- gGCgGAUGccUGCCucuGCGaGGGCGuGGCCCAc -3' miRNA: 3'- aUG-CUGC--ACGG---CGC-CCCGCuCCGGGU- -5' |
|||||||
18501 | 3' | -64.5 | NC_004681.1 | + | 50391 | 0.77 | 0.05557 |
Target: 5'- aGCGuCG-GCCGCGGGGaCGuGGCCCu -3' miRNA: 3'- aUGCuGCaCGGCGCCCC-GCuCCGGGu -5' |
|||||||
18501 | 3' | -64.5 | NC_004681.1 | + | 51104 | 0.71 | 0.154926 |
Target: 5'- gACGACGgccucCCGUGGGGUGAagcagugaaGGCCCu -3' miRNA: 3'- aUGCUGCac---GGCGCCCCGCU---------CCGGGu -5' |
|||||||
18501 | 3' | -64.5 | NC_004681.1 | + | 54397 | 0.7 | 0.184809 |
Target: 5'- gACgGAUGUGCCGCucuugagguGGGCGAGGaCCAg -3' miRNA: 3'- aUG-CUGCACGGCGc--------CCCGCUCCgGGU- -5' |
|||||||
18501 | 3' | -64.5 | NC_004681.1 | + | 56758 | 1.05 | 0.00037 |
Target: 5'- cUACGACGUGCCGCGGGGCGAGGCCCAc -3' miRNA: 3'- -AUGCUGCACGGCGCCCCGCUCCGGGU- -5' |
|||||||
18501 | 3' | -64.5 | NC_004681.1 | + | 61727 | 0.69 | 0.20917 |
Target: 5'- gGCGAUG-GUCGCcucuuccaGGGCGGGGCUCAu -3' miRNA: 3'- aUGCUGCaCGGCGc-------CCCGCUCCGGGU- -5' |
|||||||
18501 | 3' | -64.5 | NC_004681.1 | + | 67355 | 0.66 | 0.335206 |
Target: 5'- -uCGGCGuUGCgGUGcGGCGGGGCCa- -3' miRNA: 3'- auGCUGC-ACGgCGCcCCGCUCCGGgu -5' |
|||||||
18501 | 3' | -64.5 | NC_004681.1 | + | 69222 | 0.67 | 0.306133 |
Target: 5'- gGCGAgGgagGCCaggGCGcGGGCGAGGCg-- -3' miRNA: 3'- aUGCUgCa--CGG---CGC-CCCGCUCCGggu -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home