miRNA display CGI


Results 1 - 20 of 29 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18501 5' -53.6 NC_004681.1 + 2660 0.66 0.884205
Target:  5'- cCCGGGUCuCCUACGUCucCGagcGUCAc -3'
miRNA:   3'- uGGCCCAGcGGGUGUAGuuGU---UAGUc -5'
18501 5' -53.6 NC_004681.1 + 18186 0.66 0.876673
Target:  5'- uGCCGGGgaugccgaUGCCCAUAcCcgcgggcggGACAAUCGGa -3'
miRNA:   3'- -UGGCCCa-------GCGGGUGUaG---------UUGUUAGUC- -5'
18501 5' -53.6 NC_004681.1 + 25242 0.66 0.868893
Target:  5'- gGCCauGG-CGCCCGCggCGGCGGUUGGg -3'
miRNA:   3'- -UGGc-CCaGCGGGUGuaGUUGUUAGUC- -5'
18501 5' -53.6 NC_004681.1 + 48712 0.66 0.868893
Target:  5'- uUCGaGUCGCCCGCgGUCAACGAg--- -3'
miRNA:   3'- uGGCcCAGCGGGUG-UAGUUGUUaguc -5'
18501 5' -53.6 NC_004681.1 + 39176 0.66 0.868893
Target:  5'- uCCGGGccgcggagaugcUCGCCCucgACGUCGAgGacGUCAGc -3'
miRNA:   3'- uGGCCC------------AGCGGG---UGUAGUUgU--UAGUC- -5'
18501 5' -53.6 NC_004681.1 + 66757 0.66 0.84413
Target:  5'- gGCCGGuGgcaacgcCGCCUACAUCGACGcUgAGc -3'
miRNA:   3'- -UGGCC-Ca------GCGGGUGUAGUUGUuAgUC- -5'
18501 5' -53.6 NC_004681.1 + 61763 0.67 0.838934
Target:  5'- gACCGcGGcCGCCaucggccaggagcucUACGUCGcCAAUCAGg -3'
miRNA:   3'- -UGGC-CCaGCGG---------------GUGUAGUuGUUAGUC- -5'
18501 5' -53.6 NC_004681.1 + 596 0.67 0.8174
Target:  5'- gGCCGGGUccagcuugaCGCCCAgCAUCu-CGGcCAGg -3'
miRNA:   3'- -UGGCCCA---------GCGGGU-GUAGuuGUUaGUC- -5'
18501 5' -53.6 NC_004681.1 + 22946 0.67 0.808095
Target:  5'- aACUGGGUuggaacccggagCGCaCCACAUUcACGGUCAa -3'
miRNA:   3'- -UGGCCCA------------GCG-GGUGUAGuUGUUAGUc -5'
18501 5' -53.6 NC_004681.1 + 58813 0.67 0.798608
Target:  5'- cCCGGGucgaauUCGCCCAUcggAUCAACGAg--- -3'
miRNA:   3'- uGGCCC------AGCGGGUG---UAGUUGUUaguc -5'
18501 5' -53.6 NC_004681.1 + 17943 0.67 0.798608
Target:  5'- cGCCGGGgCGCCCGgGUUggUGAggcCGGu -3'
miRNA:   3'- -UGGCCCaGCGGGUgUAGuuGUUa--GUC- -5'
18501 5' -53.6 NC_004681.1 + 19363 0.68 0.779131
Target:  5'- gACCGGGUCGaCCACAccggccUgGGCGA-CGGg -3'
miRNA:   3'- -UGGCCCAGCgGGUGU------AgUUGUUaGUC- -5'
18501 5' -53.6 NC_004681.1 + 27540 0.68 0.779131
Target:  5'- cGCUGGGcUCGCCCAUgAUCAugccgaGGUCAa -3'
miRNA:   3'- -UGGCCC-AGCGGGUG-UAGUug----UUAGUc -5'
18501 5' -53.6 NC_004681.1 + 36031 0.68 0.776156
Target:  5'- cACCGGGUCGCUCACGcuuccuccccgguaUCcaguGCAgcgagaacgucAUCAGc -3'
miRNA:   3'- -UGGCCCAGCGGGUGU--------------AGu---UGU-----------UAGUC- -5'
18501 5' -53.6 NC_004681.1 + 44998 0.68 0.759056
Target:  5'- gGCCucgugGGcGUCGCCCGCuUCGGCAAUg-- -3'
miRNA:   3'- -UGG-----CC-CAGCGGGUGuAGUUGUUAguc -5'
18501 5' -53.6 NC_004681.1 + 3619 0.68 0.748822
Target:  5'- -aCGGcGUCGCCCGCGaCAAgAAgCAGg -3'
miRNA:   3'- ugGCC-CAGCGGGUGUaGUUgUUaGUC- -5'
18501 5' -53.6 NC_004681.1 + 13070 0.69 0.73847
Target:  5'- aGCCGGugaGCgCACGUCAGCGccgGUCAGc -3'
miRNA:   3'- -UGGCCcagCGgGUGUAGUUGU---UAGUC- -5'
18501 5' -53.6 NC_004681.1 + 48837 0.69 0.728014
Target:  5'- uCCGGGU--UCCACAUCAGCAacaccuauAUCGGc -3'
miRNA:   3'- uGGCCCAgcGGGUGUAGUUGU--------UAGUC- -5'
18501 5' -53.6 NC_004681.1 + 23733 0.69 0.696124
Target:  5'- cCCGGcUCGCCguCGUCGGCGAaCGGg -3'
miRNA:   3'- uGGCCcAGCGGguGUAGUUGUUaGUC- -5'
18501 5' -53.6 NC_004681.1 + 2226 0.69 0.685357
Target:  5'- uGCCGGGUUa-CCACAUCAGCGGggguggcCAGu -3'
miRNA:   3'- -UGGCCCAGcgGGUGUAGUUGUUa------GUC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.