miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18502 5' -58.6 NC_004681.1 + 59652 0.66 0.676562
Target:  5'- uCCUCUGUCGcgucGAUGGACUGGUuuauccgGUCGAu -3'
miRNA:   3'- -GGAGGCGGUc---CUGCCUGAUCA-------CGGCU- -5'
18502 5' -58.6 NC_004681.1 + 56860 0.66 0.667232
Target:  5'- gUUCUGCCAGGugcgUGGACUgaAGUGaccCCGGa -3'
miRNA:   3'- gGAGGCGGUCCu---GCCUGA--UCAC---GGCU- -5'
18502 5' -58.6 NC_004681.1 + 22389 0.66 0.667231
Target:  5'- cCCUgCGCCAuGACGGGCagGGcGCCc- -3'
miRNA:   3'- -GGAgGCGGUcCUGCCUGa-UCaCGGcu -5'
18502 5' -58.6 NC_004681.1 + 60312 0.66 0.656835
Target:  5'- -gUCCGCCacuAGGcgugauccccGCGcGGCgGGUGCCGAu -3'
miRNA:   3'- ggAGGCGG---UCC----------UGC-CUGaUCACGGCU- -5'
18502 5' -58.6 NC_004681.1 + 26823 0.66 0.656835
Target:  5'- -gUUgGCCGGGGCGGGCUua--CCGAg -3'
miRNA:   3'- ggAGgCGGUCCUGCCUGAucacGGCU- -5'
18502 5' -58.6 NC_004681.1 + 22539 0.66 0.656835
Target:  5'- --cCCGCguGGACguagaacuucagGGugUAGUGCgGAg -3'
miRNA:   3'- ggaGGCGguCCUG------------CCugAUCACGgCU- -5'
18502 5' -58.6 NC_004681.1 + 7441 0.66 0.646419
Target:  5'- gCUUCGCCgcGGcGGCGGGgUcagccccgGGUGCCGGg -3'
miRNA:   3'- gGAGGCGG--UC-CUGCCUgA--------UCACGGCU- -5'
18502 5' -58.6 NC_004681.1 + 4892 0.66 0.635991
Target:  5'- -gUuuGUCAGGGCGGAUUAGguucggGUCGu -3'
miRNA:   3'- ggAggCGGUCCUGCCUGAUCa-----CGGCu -5'
18502 5' -58.6 NC_004681.1 + 8775 0.66 0.625559
Target:  5'- aCUCgGUCAGGuacgacagguuCGGGCUGGUGaCGGg -3'
miRNA:   3'- gGAGgCGGUCCu----------GCCUGAUCACgGCU- -5'
18502 5' -58.6 NC_004681.1 + 25209 0.67 0.615133
Target:  5'- aCUCCaGCgGGGugGGuccGCggccaaccgaGGUGCCGAg -3'
miRNA:   3'- gGAGG-CGgUCCugCC---UGa---------UCACGGCU- -5'
18502 5' -58.6 NC_004681.1 + 27196 0.67 0.615133
Target:  5'- gCCUCCaCCGGGugcgagUGGAC-GGUGCCa- -3'
miRNA:   3'- -GGAGGcGGUCCu-----GCCUGaUCACGGcu -5'
18502 5' -58.6 NC_004681.1 + 14233 0.67 0.594329
Target:  5'- cCUUCUGCagaAGGGCGGACgucgcUGCCa- -3'
miRNA:   3'- -GGAGGCGg--UCCUGCCUGauc--ACGGcu -5'
18502 5' -58.6 NC_004681.1 + 2118 0.67 0.594329
Target:  5'- cCCUCCacgaccaccugGCCGcGGcCGGAUgGGUGCUGGg -3'
miRNA:   3'- -GGAGG-----------CGGU-CCuGCCUGaUCACGGCU- -5'
18502 5' -58.6 NC_004681.1 + 3322 0.67 0.573639
Target:  5'- gCCUCgGCCAGGuccCGG-UUGGUGuuGc -3'
miRNA:   3'- -GGAGgCGGUCCu--GCCuGAUCACggCu -5'
18502 5' -58.6 NC_004681.1 + 31441 0.68 0.553122
Target:  5'- uCUUCC-CCggguAGGACGGAUUGGaGCCGu -3'
miRNA:   3'- -GGAGGcGG----UCCUGCCUGAUCaCGGCu -5'
18502 5' -58.6 NC_004681.1 + 12230 0.68 0.542944
Target:  5'- uCCUUCGCCuuGAaGGACUGcuUGCCGAc -3'
miRNA:   3'- -GGAGGCGGucCUgCCUGAUc-ACGGCU- -5'
18502 5' -58.6 NC_004681.1 + 63281 0.7 0.400519
Target:  5'- aUCUCCGCC---GCGGACaucagGGUGUCGAg -3'
miRNA:   3'- -GGAGGCGGuccUGCCUGa----UCACGGCU- -5'
18502 5' -58.6 NC_004681.1 + 23649 0.72 0.327286
Target:  5'- aCUgUGCCAGaGACGG--UGGUGCCGGg -3'
miRNA:   3'- gGAgGCGGUC-CUGCCugAUCACGGCU- -5'
18502 5' -58.6 NC_004681.1 + 14479 0.8 0.104758
Target:  5'- gCCUCCGCCgagcAGGGCGcGCUGGUgGCCGGu -3'
miRNA:   3'- -GGAGGCGG----UCCUGCcUGAUCA-CGGCU- -5'
18502 5' -58.6 NC_004681.1 + 57089 1.1 0.000731
Target:  5'- gCCUCCGCCAGGACGGACUAGUGCCGAc -3'
miRNA:   3'- -GGAGGCGGUCCUGCCUGAUCACGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.