Results 1 - 20 of 35 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18503 | 3' | -54.6 | NC_004681.1 | + | 43081 | 0.66 | 0.86272 |
Target: 5'- ----aAGCGGGGGAGaugccUCG-CACaCGAGg -3' miRNA: 3'- agcuaUCGCCCCUUC-----AGCuGUG-GCUC- -5' |
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18503 | 3' | -54.6 | NC_004681.1 | + | 25205 | 0.66 | 0.86272 |
Target: 5'- ----cAGCGGGGuGGguccgCGGCcaACCGAGg -3' miRNA: 3'- agcuaUCGCCCCuUCa----GCUG--UGGCUC- -5' |
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18503 | 3' | -54.6 | NC_004681.1 | + | 22917 | 0.66 | 0.85467 |
Target: 5'- aUCGGaGGCGGGGucGccccggCGAUGCCGuAGu -3' miRNA: 3'- -AGCUaUCGCCCCuuCa-----GCUGUGGC-UC- -5' |
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18503 | 3' | -54.6 | NC_004681.1 | + | 49804 | 0.66 | 0.85467 |
Target: 5'- gCGGUGGUggagggugagGGGGAGGUaGAgGCCGcAGa -3' miRNA: 3'- aGCUAUCG----------CCCCUUCAgCUgUGGC-UC- -5' |
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18503 | 3' | -54.6 | NC_004681.1 | + | 74071 | 0.66 | 0.85467 |
Target: 5'- gUCGAggcGUGGcGGAuGGUCacgGACGCUGAGg -3' miRNA: 3'- -AGCUau-CGCC-CCU-UCAG---CUGUGGCUC- -5' |
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18503 | 3' | -54.6 | NC_004681.1 | + | 50146 | 0.66 | 0.846398 |
Target: 5'- gUCGAUGGCGucGGAGaCGuaGCCGAGg -3' miRNA: 3'- -AGCUAUCGCccCUUCaGCugUGGCUC- -5' |
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18503 | 3' | -54.6 | NC_004681.1 | + | 1044 | 0.66 | 0.832724 |
Target: 5'- cCGGUAGgucaGGGuGAGGUCGGCGucuuggaggaugagcUCGAGg -3' miRNA: 3'- aGCUAUCg---CCC-CUUCAGCUGU---------------GGCUC- -5' |
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18503 | 3' | -54.6 | NC_004681.1 | + | 60410 | 0.66 | 0.829224 |
Target: 5'- aCGGUA-CGGGGgcGUUGaACAUCGAc -3' miRNA: 3'- aGCUAUcGCCCCuuCAGC-UGUGGCUc -5' |
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18503 | 3' | -54.6 | NC_004681.1 | + | 56212 | 0.66 | 0.829224 |
Target: 5'- gUCGGUGGCcuGGAccggcGUCGAC-CCGAGc -3' miRNA: 3'- -AGCUAUCGccCCUu----CAGCUGuGGCUC- -5' |
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18503 | 3' | -54.6 | NC_004681.1 | + | 42639 | 0.67 | 0.819439 |
Target: 5'- uUCGcu-GCGGGugaugaaGAAGUgGAUGCCGGGg -3' miRNA: 3'- -AGCuauCGCCC-------CUUCAgCUGUGGCUC- -5' |
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18503 | 3' | -54.6 | NC_004681.1 | + | 32859 | 0.67 | 0.811265 |
Target: 5'- uUCGccuUGGUGGGGuacUCGcaggGCGCCGAGg -3' miRNA: 3'- -AGCu--AUCGCCCCuucAGC----UGUGGCUC- -5' |
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18503 | 3' | -54.6 | NC_004681.1 | + | 23152 | 0.67 | 0.802013 |
Target: 5'- gCGAUugcgGGCGGGGAcGUUGugGauugacggguCCGGGg -3' miRNA: 3'- aGCUA----UCGCCCCUuCAGCugU----------GGCUC- -5' |
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18503 | 3' | -54.6 | NC_004681.1 | + | 22468 | 0.67 | 0.802013 |
Target: 5'- cUCGAcguCGGGGAGGUCcuCGCCGuGg -3' miRNA: 3'- -AGCUaucGCCCCUUCAGcuGUGGCuC- -5' |
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18503 | 3' | -54.6 | NC_004681.1 | + | 14170 | 0.67 | 0.802013 |
Target: 5'- uUCGGcaaGGCGGgcaaGGAAGUCGgugucaaguucgGCACCGAa -3' miRNA: 3'- -AGCUa--UCGCC----CCUUCAGC------------UGUGGCUc -5' |
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18503 | 3' | -54.6 | NC_004681.1 | + | 25902 | 0.67 | 0.792594 |
Target: 5'- gCGGUGGCGGuGAauGGcuUCGuCGCCGAGc -3' miRNA: 3'- aGCUAUCGCCcCU--UC--AGCuGUGGCUC- -5' |
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18503 | 3' | -54.6 | NC_004681.1 | + | 22865 | 0.67 | 0.783015 |
Target: 5'- cCG-UGGUGGGGucGUCaaugcGACACuCGAGg -3' miRNA: 3'- aGCuAUCGCCCCuuCAG-----CUGUG-GCUC- -5' |
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18503 | 3' | -54.6 | NC_004681.1 | + | 41985 | 0.68 | 0.763424 |
Target: 5'- ---uUGGCGcGGGAcaGGUUGACACCugcGAGg -3' miRNA: 3'- agcuAUCGC-CCCU--UCAGCUGUGG---CUC- -5' |
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18503 | 3' | -54.6 | NC_004681.1 | + | 6999 | 0.68 | 0.763424 |
Target: 5'- aCGGUGGUGGccacGGAcaugccguGGUCGACGUCGAGc -3' miRNA: 3'- aGCUAUCGCC----CCU--------UCAGCUGUGGCUC- -5' |
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18503 | 3' | -54.6 | NC_004681.1 | + | 9455 | 0.68 | 0.733105 |
Target: 5'- -gGAUcAGCGGGGuGGU-GACaACCGGGa -3' miRNA: 3'- agCUA-UCGCCCCuUCAgCUG-UGGCUC- -5' |
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18503 | 3' | -54.6 | NC_004681.1 | + | 58686 | 0.69 | 0.712396 |
Target: 5'- cUGAUGGCGGGGGAcguguuccucGUUGAU-CCGAu -3' miRNA: 3'- aGCUAUCGCCCCUU----------CAGCUGuGGCUc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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