miRNA display CGI


Results 1 - 20 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18504 3' -56.2 NC_004681.1 + 68513 0.66 0.795932
Target:  5'- gGCUCG-CgGCAcgCCUgGgcGCCAugCCg -3'
miRNA:   3'- gCGAGCuG-CGUuaGGAgC--CGGUugGG- -5'
18504 3' -56.2 NC_004681.1 + 23893 0.66 0.795932
Target:  5'- cCGCg-GACGC-AUCCa-GGCCAugCUc -3'
miRNA:   3'- -GCGagCUGCGuUAGGagCCGGUugGG- -5'
18504 3' -56.2 NC_004681.1 + 67912 0.66 0.795932
Target:  5'- aCGCaCGACGCuGUCauaggGGCCGaacacGCCCg -3'
miRNA:   3'- -GCGaGCUGCGuUAGgag--CCGGU-----UGGG- -5'
18504 3' -56.2 NC_004681.1 + 63736 0.66 0.786503
Target:  5'- gCGCUaCGGCGC---CCUCGGUacGCCa -3'
miRNA:   3'- -GCGA-GCUGCGuuaGGAGCCGguUGGg -5'
18504 3' -56.2 NC_004681.1 + 7454 0.66 0.785551
Target:  5'- gGCUUGGCGgGAggCUUCgccgcggcggcggGGUCAGCCCc -3'
miRNA:   3'- gCGAGCUGCgUUa-GGAG-------------CCGGUUGGG- -5'
18504 3' -56.2 NC_004681.1 + 75392 0.66 0.782689
Target:  5'- gGCUaCGACaGCGAgcacgagaccgaauUCCgcgCGGCCGuacucgcggcgcaGCCCa -3'
miRNA:   3'- gCGA-GCUG-CGUU--------------AGGa--GCCGGU-------------UGGG- -5'
18504 3' -56.2 NC_004681.1 + 56565 0.66 0.776924
Target:  5'- aGUUCGAUGUcGUCUaCGGCU--CCCg -3'
miRNA:   3'- gCGAGCUGCGuUAGGaGCCGGuuGGG- -5'
18504 3' -56.2 NC_004681.1 + 12810 0.66 0.776924
Target:  5'- cCGuCUCaGugGCAc-CCUCGauGCCAGCCUc -3'
miRNA:   3'- -GC-GAG-CugCGUuaGGAGC--CGGUUGGG- -5'
18504 3' -56.2 NC_004681.1 + 39966 0.66 0.776924
Target:  5'- gCGCgUCGGCGCcgGGUCaacucaccggCUCGGCCuugAACCa -3'
miRNA:   3'- -GCG-AGCUGCG--UUAG----------GAGCCGG---UUGGg -5'
18504 3' -56.2 NC_004681.1 + 5416 0.66 0.776924
Target:  5'- gGCU--ACGCGAaaCUgcUGGCCGACCCc -3'
miRNA:   3'- gCGAgcUGCGUUagGA--GCCGGUUGGG- -5'
18504 3' -56.2 NC_004681.1 + 67397 0.66 0.767207
Target:  5'- uCGCUCaGgGCAagcccaaggccGUCCaguggcucaaGGCCAACCCg -3'
miRNA:   3'- -GCGAGcUgCGU-----------UAGGag--------CCGGUUGGG- -5'
18504 3' -56.2 NC_004681.1 + 62674 0.66 0.767207
Target:  5'- cCGcCUCGGCGCGcUCC-CGGCgu-UCCa -3'
miRNA:   3'- -GC-GAGCUGCGUuAGGaGCCGguuGGG- -5'
18504 3' -56.2 NC_004681.1 + 44966 0.66 0.764266
Target:  5'- gGCUCaGGCcCAaugagcccugcugcAUCCUCGGCCucgugggcgucGCCCg -3'
miRNA:   3'- gCGAG-CUGcGU--------------UAGGAGCCGGu----------UGGG- -5'
18504 3' -56.2 NC_004681.1 + 15379 0.66 0.75736
Target:  5'- uCGC-CGACGCcAUCCagaaCGGC--ACCCu -3'
miRNA:   3'- -GCGaGCUGCGuUAGGa---GCCGguUGGG- -5'
18504 3' -56.2 NC_004681.1 + 52268 0.66 0.75736
Target:  5'- gGCcgCGACGCGgacguuGUCCUCcuccuccagaaGGCCGACg- -3'
miRNA:   3'- gCGa-GCUGCGU------UAGGAG-----------CCGGUUGgg -5'
18504 3' -56.2 NC_004681.1 + 54496 0.66 0.747394
Target:  5'- gCGCUUGACGuCGAccaCCUCGaacuCCAcACCCa -3'
miRNA:   3'- -GCGAGCUGC-GUUa--GGAGCc---GGU-UGGG- -5'
18504 3' -56.2 NC_004681.1 + 33465 0.66 0.747394
Target:  5'- gCGCgcgCGACGCGGccggUCUCaGCCAGCg- -3'
miRNA:   3'- -GCGa--GCUGCGUUa---GGAGcCGGUUGgg -5'
18504 3' -56.2 NC_004681.1 + 29135 0.66 0.747394
Target:  5'- cCGCgucaggCGugGCGA-CCUCaacGGCCAcgucaacgaccaACCCc -3'
miRNA:   3'- -GCGa-----GCugCGUUaGGAG---CCGGU------------UGGG- -5'
18504 3' -56.2 NC_004681.1 + 6867 0.66 0.747394
Target:  5'- cCGCcaUUGGggcCGUAGUCCuucUCGGCCGACUg -3'
miRNA:   3'- -GCG--AGCU---GCGUUAGG---AGCCGGUUGGg -5'
18504 3' -56.2 NC_004681.1 + 17203 0.66 0.747394
Target:  5'- aCGCgcc-CGCGAUCUUCuGGCCcaucugAGCCCa -3'
miRNA:   3'- -GCGagcuGCGUUAGGAG-CCGG------UUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.