miRNA display CGI


Results 1 - 20 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18504 3' -56.2 NC_004681.1 + 57685 1.12 0.000785
Target:  5'- gCGCUCGACGCAAUCCUCGGCCAACCCg -3'
miRNA:   3'- -GCGAGCUGCGUUAGGAGCCGGUUGGG- -5'
18504 3' -56.2 NC_004681.1 + 1422 0.77 0.218668
Target:  5'- gGCUUGAgGCAgcccuugucggcgagGUCgUCGGCCAGCUCg -3'
miRNA:   3'- gCGAGCUgCGU---------------UAGgAGCCGGUUGGG- -5'
18504 3' -56.2 NC_004681.1 + 8988 0.76 0.251732
Target:  5'- uGUUCGGCGCca-CCUCGGCC-ACCg -3'
miRNA:   3'- gCGAGCUGCGuuaGGAGCCGGuUGGg -5'
18504 3' -56.2 NC_004681.1 + 39671 0.76 0.264504
Target:  5'- uCGUcCGAUGCGAgcUCCUCGGCCGcGCUCu -3'
miRNA:   3'- -GCGaGCUGCGUU--AGGAGCCGGU-UGGG- -5'
18504 3' -56.2 NC_004681.1 + 16919 0.75 0.282571
Target:  5'- aGCUCGAcucCGCGgaguacaccgagggGUCCUCGGgCAugCCg -3'
miRNA:   3'- gCGAGCU---GCGU--------------UAGGAGCCgGUugGG- -5'
18504 3' -56.2 NC_004681.1 + 16166 0.75 0.298722
Target:  5'- uCGCUCaucGCGCuGUCCUCGGCCAuCUUc -3'
miRNA:   3'- -GCGAGc--UGCGuUAGGAGCCGGUuGGG- -5'
18504 3' -56.2 NC_004681.1 + 63411 0.74 0.328493
Target:  5'- gGCUCGACuGCGGUCCUgaauucccUGGCC-ACCa -3'
miRNA:   3'- gCGAGCUG-CGUUAGGA--------GCCGGuUGGg -5'
18504 3' -56.2 NC_004681.1 + 586 0.74 0.336271
Target:  5'- aGCUUGACGCccagcaUCUCGGCCAggcGCCUc -3'
miRNA:   3'- gCGAGCUGCGuua---GGAGCCGGU---UGGG- -5'
18504 3' -56.2 NC_004681.1 + 3500 0.74 0.344182
Target:  5'- gGCUCG-CGCGGgcgCCgCGGCCAACUUc -3'
miRNA:   3'- gCGAGCuGCGUUa--GGaGCCGGUUGGG- -5'
18504 3' -56.2 NC_004681.1 + 41993 0.73 0.368709
Target:  5'- aCGCg-GGgGCGAU-CUCGGCCAGCCUu -3'
miRNA:   3'- -GCGagCUgCGUUAgGAGCCGGUUGGG- -5'
18504 3' -56.2 NC_004681.1 + 14528 0.73 0.368709
Target:  5'- uCGCgggCGGCGUAGauuuucgCCUCGGCC-GCCUg -3'
miRNA:   3'- -GCGa--GCUGCGUUa------GGAGCCGGuUGGG- -5'
18504 3' -56.2 NC_004681.1 + 38319 0.73 0.368709
Target:  5'- gCGC-CGcCGCGggacGUCUUCGGCCGcCCCa -3'
miRNA:   3'- -GCGaGCuGCGU----UAGGAGCCGGUuGGG- -5'
18504 3' -56.2 NC_004681.1 + 47225 0.73 0.377147
Target:  5'- aGUUCGGCGCGGcCCUCGGCguuCUCg -3'
miRNA:   3'- gCGAGCUGCGUUaGGAGCCGguuGGG- -5'
18504 3' -56.2 NC_004681.1 + 34718 0.72 0.411273
Target:  5'- gGCUUGGgaauuccCGCGcgCUUCGGCCGccGCCCc -3'
miRNA:   3'- gCGAGCU-------GCGUuaGGAGCCGGU--UGGG- -5'
18504 3' -56.2 NC_004681.1 + 3346 0.72 0.430424
Target:  5'- aGCgagCGagccaggaagaGCGCAG-CCUCGGCCAGguCCCg -3'
miRNA:   3'- gCGa--GC-----------UGCGUUaGGAGCCGGUU--GGG- -5'
18504 3' -56.2 NC_004681.1 + 8339 0.72 0.430424
Target:  5'- gCGCUCGuGCGCcucgaCCUCGGCCuggugGGCCUu -3'
miRNA:   3'- -GCGAGC-UGCGuua--GGAGCCGG-----UUGGG- -5'
18504 3' -56.2 NC_004681.1 + 49676 0.72 0.449141
Target:  5'- cCGCcUGAUGCAGUcguuggugCCUCgGGCCuGCCCg -3'
miRNA:   3'- -GCGaGCUGCGUUA--------GGAG-CCGGuUGGG- -5'
18504 3' -56.2 NC_004681.1 + 38907 0.71 0.468298
Target:  5'- uGCUggCGugGguCAAUCCaUGGCCAGCCUg -3'
miRNA:   3'- gCGA--GCugC--GUUAGGaGCCGGUUGGG- -5'
18504 3' -56.2 NC_004681.1 + 40511 0.71 0.478033
Target:  5'- uGCcCGACGUAGUCCUCgaGGUUGuauuGCCCg -3'
miRNA:   3'- gCGaGCUGCGUUAGGAG--CCGGU----UGGG- -5'
18504 3' -56.2 NC_004681.1 + 48366 0.71 0.487867
Target:  5'- aGU---GCGCGGUCuuCUCGGUCAGCCCg -3'
miRNA:   3'- gCGagcUGCGUUAG--GAGCCGGUUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.