miRNA display CGI


Results 21 - 40 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18504 3' -56.2 NC_004681.1 + 6884 0.71 0.497795
Target:  5'- cCGCUCGACGuCGaccacggcauGUCCgUGGCCAccACCg -3'
miRNA:   3'- -GCGAGCUGC-GU----------UAGGaGCCGGU--UGGg -5'
18504 3' -56.2 NC_004681.1 + 69382 0.71 0.497795
Target:  5'- aGCUCGuccACGCGGUCCaUCaGaUCGGCCCa -3'
miRNA:   3'- gCGAGC---UGCGUUAGG-AGcC-GGUUGGG- -5'
18504 3' -56.2 NC_004681.1 + 52969 0.71 0.497795
Target:  5'- gGCUCGggcACGCGGgcaggCCgauGGCCAGCCUu -3'
miRNA:   3'- gCGAGC---UGCGUUa----GGag-CCGGUUGGG- -5'
18504 3' -56.2 NC_004681.1 + 44077 0.71 0.497795
Target:  5'- uGUUUGACGU---CCUCGGCCAugggguACCUa -3'
miRNA:   3'- gCGAGCUGCGuuaGGAGCCGGU------UGGG- -5'
18504 3' -56.2 NC_004681.1 + 41069 0.7 0.507812
Target:  5'- aGCUCGGCGaGGUCaa-GGCCAugCUg -3'
miRNA:   3'- gCGAGCUGCgUUAGgagCCGGUugGG- -5'
18504 3' -56.2 NC_004681.1 + 18949 0.7 0.517914
Target:  5'- uGCgUCGAUGUAuUCCUUcGCCAGCuCCg -3'
miRNA:   3'- gCG-AGCUGCGUuAGGAGcCGGUUG-GG- -5'
18504 3' -56.2 NC_004681.1 + 65788 0.7 0.517914
Target:  5'- aGUUCGucCGUcucggCCUCGGCCGcCCCa -3'
miRNA:   3'- gCGAGCu-GCGuua--GGAGCCGGUuGGG- -5'
18504 3' -56.2 NC_004681.1 + 39092 0.7 0.538348
Target:  5'- aCGUU-GACGCcuUCCucgUCGGCC-ACCCa -3'
miRNA:   3'- -GCGAgCUGCGuuAGG---AGCCGGuUGGG- -5'
18504 3' -56.2 NC_004681.1 + 51172 0.7 0.538348
Target:  5'- cCGC-CGAgucaGCAGUCCUCGGC--GCCa -3'
miRNA:   3'- -GCGaGCUg---CGUUAGGAGCCGguUGGg -5'
18504 3' -56.2 NC_004681.1 + 55841 0.7 0.552816
Target:  5'- uGCUCGugGUAuuugCCUUGGCUacgaaugagcguggaGACCUu -3'
miRNA:   3'- gCGAGCugCGUua--GGAGCCGG---------------UUGGG- -5'
18504 3' -56.2 NC_004681.1 + 60144 0.7 0.559052
Target:  5'- uCGCUCGACGU-AUCCaaGGCCAuugacaagGCUg -3'
miRNA:   3'- -GCGAGCUGCGuUAGGagCCGGU--------UGGg -5'
18504 3' -56.2 NC_004681.1 + 54890 0.69 0.569489
Target:  5'- -aCUCGACGguGUCUgcgCGGCaggugucgucaCGACCCg -3'
miRNA:   3'- gcGAGCUGCguUAGGa--GCCG-----------GUUGGG- -5'
18504 3' -56.2 NC_004681.1 + 18796 0.69 0.569489
Target:  5'- uGCUCGAUGUugacgagaGGUCCaggCGGCUG-CCCg -3'
miRNA:   3'- gCGAGCUGCG--------UUAGGa--GCCGGUuGGG- -5'
18504 3' -56.2 NC_004681.1 + 69740 0.69 0.590498
Target:  5'- -cUUUGGagaAAUUCUCGGCCGACCCg -3'
miRNA:   3'- gcGAGCUgcgUUAGGAGCCGGUUGGG- -5'
18504 3' -56.2 NC_004681.1 + 52635 0.69 0.590498
Target:  5'- aGCgUCGAagGCug-CCUCGGCCAAgUCg -3'
miRNA:   3'- gCG-AGCUg-CGuuaGGAGCCGGUUgGG- -5'
18504 3' -56.2 NC_004681.1 + 67716 0.69 0.601054
Target:  5'- cCGCU-GGCGCua-CCgcaUGGCCAACCUg -3'
miRNA:   3'- -GCGAgCUGCGuuaGGa--GCCGGUUGGG- -5'
18504 3' -56.2 NC_004681.1 + 71733 0.69 0.611636
Target:  5'- aCGCUCcgcGCGUAGUCCUCcgGGUCAAUUg -3'
miRNA:   3'- -GCGAGc--UGCGUUAGGAG--CCGGUUGGg -5'
18504 3' -56.2 NC_004681.1 + 12188 0.69 0.611636
Target:  5'- aCGCgCGG-GCGGaCCUCGGCCAcguACUCg -3'
miRNA:   3'- -GCGaGCUgCGUUaGGAGCCGGU---UGGG- -5'
18504 3' -56.2 NC_004681.1 + 46710 0.69 0.622234
Target:  5'- uGCggGGCGgGGUCCUCGGCgAguggGCCg -3'
miRNA:   3'- gCGagCUGCgUUAGGAGCCGgU----UGGg -5'
18504 3' -56.2 NC_004681.1 + 60677 0.69 0.622234
Target:  5'- cCGCUCGugauggUGCGGUCUaCGGCCGuCUCg -3'
miRNA:   3'- -GCGAGCu-----GCGUUAGGaGCCGGUuGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.