Results 81 - 85 of 85 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18504 | 3' | -56.2 | NC_004681.1 | + | 7454 | 0.66 | 0.785551 |
Target: 5'- gGCUUGGCGgGAggCUUCgccgcggcggcggGGUCAGCCCc -3' miRNA: 3'- gCGAGCUGCgUUa-GGAG-------------CCGGUUGGG- -5' |
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18504 | 3' | -56.2 | NC_004681.1 | + | 63736 | 0.66 | 0.786503 |
Target: 5'- gCGCUaCGGCGC---CCUCGGUacGCCa -3' miRNA: 3'- -GCGA-GCUGCGuuaGGAGCCGguUGGg -5' |
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18504 | 3' | -56.2 | NC_004681.1 | + | 68513 | 0.66 | 0.795932 |
Target: 5'- gGCUCG-CgGCAcgCCUgGgcGCCAugCCg -3' miRNA: 3'- gCGAGCuG-CGUuaGGAgC--CGGUugGG- -5' |
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18504 | 3' | -56.2 | NC_004681.1 | + | 23893 | 0.66 | 0.795932 |
Target: 5'- cCGCg-GACGC-AUCCa-GGCCAugCUc -3' miRNA: 3'- -GCGagCUGCGuUAGGagCCGGUugGG- -5' |
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18504 | 3' | -56.2 | NC_004681.1 | + | 67912 | 0.66 | 0.795932 |
Target: 5'- aCGCaCGACGCuGUCauaggGGCCGaacacGCCCg -3' miRNA: 3'- -GCGaGCUGCGuUAGgag--CCGGU-----UGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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