miRNA display CGI


Results 21 - 40 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18504 3' -56.2 NC_004681.1 + 54496 0.66 0.747394
Target:  5'- gCGCUUGACGuCGAccaCCUCGaacuCCAcACCCa -3'
miRNA:   3'- -GCGAGCUGC-GUUa--GGAGCc---GGU-UGGG- -5'
18504 3' -56.2 NC_004681.1 + 52847 0.67 0.73732
Target:  5'- aGCUUccgGGCGgAAggcuggCCaUCGGCCuGCCCg -3'
miRNA:   3'- gCGAG---CUGCgUUa-----GG-AGCCGGuUGGG- -5'
18504 3' -56.2 NC_004681.1 + 46788 0.67 0.73732
Target:  5'- uGCUCGuuGCGggaGUCCUUGGagaUGGCCUg -3'
miRNA:   3'- gCGAGCugCGU---UAGGAGCCg--GUUGGG- -5'
18504 3' -56.2 NC_004681.1 + 643 0.67 0.727148
Target:  5'- gGUgaUCGACGcCGAUCC--GGUCGACCUg -3'
miRNA:   3'- gCG--AGCUGC-GUUAGGagCCGGUUGGG- -5'
18504 3' -56.2 NC_004681.1 + 43704 0.67 0.727148
Target:  5'- cCGC-CGcCGCAGUacaccgccgcCCUCGGUgAACUCg -3'
miRNA:   3'- -GCGaGCuGCGUUA----------GGAGCCGgUUGGG- -5'
18504 3' -56.2 NC_004681.1 + 51058 0.67 0.725102
Target:  5'- gGCgUCGGCGUAGguguagccgaaCUUGGCCAGCgCg -3'
miRNA:   3'- gCG-AGCUGCGUUag---------GAGCCGGUUGgG- -5'
18504 3' -56.2 NC_004681.1 + 26783 0.67 0.717917
Target:  5'- gGCUCGGCGguGguucugucaacuucaCCgcggCGGCCAACgCu -3'
miRNA:   3'- gCGAGCUGCguUa--------------GGa---GCCGGUUGgG- -5'
18504 3' -56.2 NC_004681.1 + 22114 0.67 0.706549
Target:  5'- gCGCUCG-CGCuGUCCUUGaagaCGACCUu -3'
miRNA:   3'- -GCGAGCuGCGuUAGGAGCcg--GUUGGG- -5'
18504 3' -56.2 NC_004681.1 + 45718 0.67 0.706549
Target:  5'- aGCUUGugGaacuCGGUacCCUUGGCCGACgCg -3'
miRNA:   3'- gCGAGCugC----GUUA--GGAGCCGGUUGgG- -5'
18504 3' -56.2 NC_004681.1 + 18866 0.67 0.706549
Target:  5'- --aUCGACGCAuggauuUCCUacGUCAGCCCa -3'
miRNA:   3'- gcgAGCUGCGUu-----AGGAgcCGGUUGGG- -5'
18504 3' -56.2 NC_004681.1 + 54969 0.67 0.696142
Target:  5'- aGCUUGuugcCGCGgucGUCCUUGGCguCAGCCg -3'
miRNA:   3'- gCGAGCu---GCGU---UAGGAGCCG--GUUGGg -5'
18504 3' -56.2 NC_004681.1 + 16977 0.67 0.696142
Target:  5'- uGCUCcaauugcguuACGCGAgcacgcUUCUCGGCCAGCUUg -3'
miRNA:   3'- gCGAGc---------UGCGUU------AGGAGCCGGUUGGG- -5'
18504 3' -56.2 NC_004681.1 + 12398 0.67 0.685679
Target:  5'- cCGCggCGACGC--UCgUCGGUgAGCCg -3'
miRNA:   3'- -GCGa-GCUGCGuuAGgAGCCGgUUGGg -5'
18504 3' -56.2 NC_004681.1 + 16824 0.68 0.675168
Target:  5'- aGCUUGACGguG-CCaUCGcuGCCAccGCCCg -3'
miRNA:   3'- gCGAGCUGCguUaGG-AGC--CGGU--UGGG- -5'
18504 3' -56.2 NC_004681.1 + 8951 0.68 0.675168
Target:  5'- gCGUUCGAC-CGGcuucaccgccUCCUCGGCCu-CUCg -3'
miRNA:   3'- -GCGAGCUGcGUU----------AGGAGCCGGuuGGG- -5'
18504 3' -56.2 NC_004681.1 + 56313 0.68 0.664619
Target:  5'- gGgUCGACGcCGGUCCa-GGCCAccgACUCa -3'
miRNA:   3'- gCgAGCUGC-GUUAGGagCCGGU---UGGG- -5'
18504 3' -56.2 NC_004681.1 + 27133 0.68 0.664619
Target:  5'- gGCUCGuccUGCAagcGUUCUCGGCgGGCUa -3'
miRNA:   3'- gCGAGCu--GCGU---UAGGAGCCGgUUGGg -5'
18504 3' -56.2 NC_004681.1 + 46822 0.68 0.664619
Target:  5'- gCGCUacgaGACGCAGcCCcgCGGCaaccGCCCc -3'
miRNA:   3'- -GCGAg---CUGCGUUaGGa-GCCGgu--UGGG- -5'
18504 3' -56.2 NC_004681.1 + 42019 0.68 0.664619
Target:  5'- --gUCGACGCcaaCCUCGugcgcGCCAACCUg -3'
miRNA:   3'- gcgAGCUGCGuuaGGAGC-----CGGUUGGG- -5'
18504 3' -56.2 NC_004681.1 + 8437 0.68 0.661448
Target:  5'- aGUUCGACGUcucguucaacgugaGcgCCaaggCGGCUGACCCc -3'
miRNA:   3'- gCGAGCUGCG--------------UuaGGa---GCCGGUUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.