miRNA display CGI


Results 61 - 80 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18504 3' -56.2 NC_004681.1 + 41069 0.7 0.507812
Target:  5'- aGCUCGGCGaGGUCaa-GGCCAugCUg -3'
miRNA:   3'- gCGAGCUGCgUUAGgagCCGGUugGG- -5'
18504 3' -56.2 NC_004681.1 + 69382 0.71 0.497795
Target:  5'- aGCUCGuccACGCGGUCCaUCaGaUCGGCCCa -3'
miRNA:   3'- gCGAGC---UGCGUUAGG-AGcC-GGUUGGG- -5'
18504 3' -56.2 NC_004681.1 + 6884 0.71 0.497795
Target:  5'- cCGCUCGACGuCGaccacggcauGUCCgUGGCCAccACCg -3'
miRNA:   3'- -GCGAGCUGC-GU----------UAGGaGCCGGU--UGGg -5'
18504 3' -56.2 NC_004681.1 + 44077 0.71 0.497795
Target:  5'- uGUUUGACGU---CCUCGGCCAugggguACCUa -3'
miRNA:   3'- gCGAGCUGCGuuaGGAGCCGGU------UGGG- -5'
18504 3' -56.2 NC_004681.1 + 52969 0.71 0.497795
Target:  5'- gGCUCGggcACGCGGgcaggCCgauGGCCAGCCUu -3'
miRNA:   3'- gCGAGC---UGCGUUa----GGag-CCGGUUGGG- -5'
18504 3' -56.2 NC_004681.1 + 48366 0.71 0.487867
Target:  5'- aGU---GCGCGGUCuuCUCGGUCAGCCCg -3'
miRNA:   3'- gCGagcUGCGUUAG--GAGCCGGUUGGG- -5'
18504 3' -56.2 NC_004681.1 + 40511 0.71 0.478033
Target:  5'- uGCcCGACGUAGUCCUCgaGGUUGuauuGCCCg -3'
miRNA:   3'- gCGaGCUGCGUUAGGAG--CCGGU----UGGG- -5'
18504 3' -56.2 NC_004681.1 + 38907 0.71 0.468298
Target:  5'- uGCUggCGugGguCAAUCCaUGGCCAGCCUg -3'
miRNA:   3'- gCGA--GCugC--GUUAGGaGCCGGUUGGG- -5'
18504 3' -56.2 NC_004681.1 + 49676 0.72 0.449141
Target:  5'- cCGCcUGAUGCAGUcguuggugCCUCgGGCCuGCCCg -3'
miRNA:   3'- -GCGaGCUGCGUUA--------GGAG-CCGGuUGGG- -5'
18504 3' -56.2 NC_004681.1 + 3346 0.72 0.430424
Target:  5'- aGCgagCGagccaggaagaGCGCAG-CCUCGGCCAGguCCCg -3'
miRNA:   3'- gCGa--GC-----------UGCGUUaGGAGCCGGUU--GGG- -5'
18504 3' -56.2 NC_004681.1 + 8339 0.72 0.430424
Target:  5'- gCGCUCGuGCGCcucgaCCUCGGCCuggugGGCCUu -3'
miRNA:   3'- -GCGAGC-UGCGuua--GGAGCCGG-----UUGGG- -5'
18504 3' -56.2 NC_004681.1 + 34718 0.72 0.411273
Target:  5'- gGCUUGGgaauuccCGCGcgCUUCGGCCGccGCCCc -3'
miRNA:   3'- gCGAGCU-------GCGUuaGGAGCCGGU--UGGG- -5'
18504 3' -56.2 NC_004681.1 + 47225 0.73 0.377147
Target:  5'- aGUUCGGCGCGGcCCUCGGCguuCUCg -3'
miRNA:   3'- gCGAGCUGCGUUaGGAGCCGguuGGG- -5'
18504 3' -56.2 NC_004681.1 + 41993 0.73 0.368709
Target:  5'- aCGCg-GGgGCGAU-CUCGGCCAGCCUu -3'
miRNA:   3'- -GCGagCUgCGUUAgGAGCCGGUUGGG- -5'
18504 3' -56.2 NC_004681.1 + 14528 0.73 0.368709
Target:  5'- uCGCgggCGGCGUAGauuuucgCCUCGGCC-GCCUg -3'
miRNA:   3'- -GCGa--GCUGCGUUa------GGAGCCGGuUGGG- -5'
18504 3' -56.2 NC_004681.1 + 38319 0.73 0.368709
Target:  5'- gCGC-CGcCGCGggacGUCUUCGGCCGcCCCa -3'
miRNA:   3'- -GCGaGCuGCGU----UAGGAGCCGGUuGGG- -5'
18504 3' -56.2 NC_004681.1 + 3500 0.74 0.344182
Target:  5'- gGCUCG-CGCGGgcgCCgCGGCCAACUUc -3'
miRNA:   3'- gCGAGCuGCGUUa--GGaGCCGGUUGGG- -5'
18504 3' -56.2 NC_004681.1 + 586 0.74 0.336271
Target:  5'- aGCUUGACGCccagcaUCUCGGCCAggcGCCUc -3'
miRNA:   3'- gCGAGCUGCGuua---GGAGCCGGU---UGGG- -5'
18504 3' -56.2 NC_004681.1 + 63411 0.74 0.328493
Target:  5'- gGCUCGACuGCGGUCCUgaauucccUGGCC-ACCa -3'
miRNA:   3'- gCGAGCUG-CGUUAGGA--------GCCGGuUGGg -5'
18504 3' -56.2 NC_004681.1 + 16166 0.75 0.298722
Target:  5'- uCGCUCaucGCGCuGUCCUCGGCCAuCUUc -3'
miRNA:   3'- -GCGAGc--UGCGuUAGGAGCCGGUuGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.