Results 81 - 85 of 85 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
18504 | 3' | -56.2 | NC_004681.1 | + | 16919 | 0.75 | 0.282571 |
Target: 5'- aGCUCGAcucCGCGgaguacaccgagggGUCCUCGGgCAugCCg -3' miRNA: 3'- gCGAGCU---GCGU--------------UAGGAGCCgGUugGG- -5' |
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18504 | 3' | -56.2 | NC_004681.1 | + | 39671 | 0.76 | 0.264504 |
Target: 5'- uCGUcCGAUGCGAgcUCCUCGGCCGcGCUCu -3' miRNA: 3'- -GCGaGCUGCGUU--AGGAGCCGGU-UGGG- -5' |
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18504 | 3' | -56.2 | NC_004681.1 | + | 8988 | 0.76 | 0.251732 |
Target: 5'- uGUUCGGCGCca-CCUCGGCC-ACCg -3' miRNA: 3'- gCGAGCUGCGuuaGGAGCCGGuUGGg -5' |
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18504 | 3' | -56.2 | NC_004681.1 | + | 1422 | 0.77 | 0.218668 |
Target: 5'- gGCUUGAgGCAgcccuugucggcgagGUCgUCGGCCAGCUCg -3' miRNA: 3'- gCGAGCUgCGU---------------UAGgAGCCGGUUGGG- -5' |
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18504 | 3' | -56.2 | NC_004681.1 | + | 57685 | 1.12 | 0.000785 |
Target: 5'- gCGCUCGACGCAAUCCUCGGCCAACCCg -3' miRNA: 3'- -GCGAGCUGCGUUAGGAGCCGGUUGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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