miRNA display CGI


Results 21 - 40 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18504 3' -56.2 NC_004681.1 + 16824 0.68 0.675168
Target:  5'- aGCUUGACGguG-CCaUCGcuGCCAccGCCCg -3'
miRNA:   3'- gCGAGCUGCguUaGG-AGC--CGGU--UGGG- -5'
18504 3' -56.2 NC_004681.1 + 16919 0.75 0.282571
Target:  5'- aGCUCGAcucCGCGgaguacaccgagggGUCCUCGGgCAugCCg -3'
miRNA:   3'- gCGAGCU---GCGU--------------UAGGAGCCgGUugGG- -5'
18504 3' -56.2 NC_004681.1 + 16977 0.67 0.696142
Target:  5'- uGCUCcaauugcguuACGCGAgcacgcUUCUCGGCCAGCUUg -3'
miRNA:   3'- gCGAGc---------UGCGUU------AGGAGCCGGUUGGG- -5'
18504 3' -56.2 NC_004681.1 + 17203 0.66 0.747394
Target:  5'- aCGCgcc-CGCGAUCUUCuGGCCcaucugAGCCCa -3'
miRNA:   3'- -GCGagcuGCGUUAGGAG-CCGG------UUGGG- -5'
18504 3' -56.2 NC_004681.1 + 18796 0.69 0.569489
Target:  5'- uGCUCGAUGUugacgagaGGUCCaggCGGCUG-CCCg -3'
miRNA:   3'- gCGAGCUGCG--------UUAGGa--GCCGGUuGGG- -5'
18504 3' -56.2 NC_004681.1 + 18866 0.67 0.706549
Target:  5'- --aUCGACGCAuggauuUCCUacGUCAGCCCa -3'
miRNA:   3'- gcgAGCUGCGUu-----AGGAgcCGGUUGGG- -5'
18504 3' -56.2 NC_004681.1 + 18949 0.7 0.517914
Target:  5'- uGCgUCGAUGUAuUCCUUcGCCAGCuCCg -3'
miRNA:   3'- gCG-AGCUGCGUuAGGAGcCGGUUG-GG- -5'
18504 3' -56.2 NC_004681.1 + 21291 0.68 0.654042
Target:  5'- aGUggCGACGCuGUCCauUCGGCCGuuaaucgaaAUCCa -3'
miRNA:   3'- gCGa-GCUGCGuUAGG--AGCCGGU---------UGGG- -5'
18504 3' -56.2 NC_004681.1 + 22114 0.67 0.706549
Target:  5'- gCGCUCG-CGCuGUCCUUGaagaCGACCUu -3'
miRNA:   3'- -GCGAGCuGCGuUAGGAGCcg--GUUGGG- -5'
18504 3' -56.2 NC_004681.1 + 23893 0.66 0.795932
Target:  5'- cCGCg-GACGC-AUCCa-GGCCAugCUc -3'
miRNA:   3'- -GCGagCUGCGuUAGGagCCGGUugGG- -5'
18504 3' -56.2 NC_004681.1 + 26783 0.67 0.717917
Target:  5'- gGCUCGGCGguGguucugucaacuucaCCgcggCGGCCAACgCu -3'
miRNA:   3'- gCGAGCUGCguUa--------------GGa---GCCGGUUGgG- -5'
18504 3' -56.2 NC_004681.1 + 27133 0.68 0.664619
Target:  5'- gGCUCGuccUGCAagcGUUCUCGGCgGGCUa -3'
miRNA:   3'- gCGAGCu--GCGU---UAGGAGCCGgUUGGg -5'
18504 3' -56.2 NC_004681.1 + 29135 0.66 0.747394
Target:  5'- cCGCgucaggCGugGCGA-CCUCaacGGCCAcgucaacgaccaACCCc -3'
miRNA:   3'- -GCGa-----GCugCGUUaGGAG---CCGGU------------UGGG- -5'
18504 3' -56.2 NC_004681.1 + 33465 0.66 0.747394
Target:  5'- gCGCgcgCGACGCGGccggUCUCaGCCAGCg- -3'
miRNA:   3'- -GCGa--GCUGCGUUa---GGAGcCGGUUGgg -5'
18504 3' -56.2 NC_004681.1 + 34718 0.72 0.411273
Target:  5'- gGCUUGGgaauuccCGCGcgCUUCGGCCGccGCCCc -3'
miRNA:   3'- gCGAGCU-------GCGUuaGGAGCCGGU--UGGG- -5'
18504 3' -56.2 NC_004681.1 + 38319 0.73 0.368709
Target:  5'- gCGC-CGcCGCGggacGUCUUCGGCCGcCCCa -3'
miRNA:   3'- -GCGaGCuGCGU----UAGGAGCCGGUuGGG- -5'
18504 3' -56.2 NC_004681.1 + 38907 0.71 0.468298
Target:  5'- uGCUggCGugGguCAAUCCaUGGCCAGCCUg -3'
miRNA:   3'- gCGA--GCugC--GUUAGGaGCCGGUUGGG- -5'
18504 3' -56.2 NC_004681.1 + 39092 0.7 0.538348
Target:  5'- aCGUU-GACGCcuUCCucgUCGGCC-ACCCa -3'
miRNA:   3'- -GCGAgCUGCGuuAGG---AGCCGGuUGGG- -5'
18504 3' -56.2 NC_004681.1 + 39671 0.76 0.264504
Target:  5'- uCGUcCGAUGCGAgcUCCUCGGCCGcGCUCu -3'
miRNA:   3'- -GCGaGCUGCGUU--AGGAGCCGGU-UGGG- -5'
18504 3' -56.2 NC_004681.1 + 39921 0.68 0.654042
Target:  5'- gCGCgCGGUGCGGUCCaCGGUCuuGCCCc -3'
miRNA:   3'- -GCGaGCUGCGUUAGGaGCCGGu-UGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.