miRNA display CGI


Results 41 - 60 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18504 3' -56.2 NC_004681.1 + 39966 0.66 0.776924
Target:  5'- gCGCgUCGGCGCcgGGUCaacucaccggCUCGGCCuugAACCa -3'
miRNA:   3'- -GCG-AGCUGCG--UUAG----------GAGCCGG---UUGGg -5'
18504 3' -56.2 NC_004681.1 + 40511 0.71 0.478033
Target:  5'- uGCcCGACGUAGUCCUCgaGGUUGuauuGCCCg -3'
miRNA:   3'- gCGaGCUGCGUUAGGAG--CCGGU----UGGG- -5'
18504 3' -56.2 NC_004681.1 + 41069 0.7 0.507812
Target:  5'- aGCUCGGCGaGGUCaa-GGCCAugCUg -3'
miRNA:   3'- gCGAGCUGCgUUAGgagCCGGUugGG- -5'
18504 3' -56.2 NC_004681.1 + 41993 0.73 0.368709
Target:  5'- aCGCg-GGgGCGAU-CUCGGCCAGCCUu -3'
miRNA:   3'- -GCGagCUgCGUUAgGAGCCGGUUGGG- -5'
18504 3' -56.2 NC_004681.1 + 42019 0.68 0.664619
Target:  5'- --gUCGACGCcaaCCUCGugcgcGCCAACCUg -3'
miRNA:   3'- gcgAGCUGCGuuaGGAGC-----CGGUUGGG- -5'
18504 3' -56.2 NC_004681.1 + 43704 0.67 0.727148
Target:  5'- cCGC-CGcCGCAGUacaccgccgcCCUCGGUgAACUCg -3'
miRNA:   3'- -GCGaGCuGCGUUA----------GGAGCCGgUUGGG- -5'
18504 3' -56.2 NC_004681.1 + 44077 0.71 0.497795
Target:  5'- uGUUUGACGU---CCUCGGCCAugggguACCUa -3'
miRNA:   3'- gCGAGCUGCGuuaGGAGCCGGU------UGGG- -5'
18504 3' -56.2 NC_004681.1 + 44966 0.66 0.764266
Target:  5'- gGCUCaGGCcCAaugagcccugcugcAUCCUCGGCCucgugggcgucGCCCg -3'
miRNA:   3'- gCGAG-CUGcGU--------------UAGGAGCCGGu----------UGGG- -5'
18504 3' -56.2 NC_004681.1 + 45718 0.67 0.706549
Target:  5'- aGCUUGugGaacuCGGUacCCUUGGCCGACgCg -3'
miRNA:   3'- gCGAGCugC----GUUA--GGAGCCGGUUGgG- -5'
18504 3' -56.2 NC_004681.1 + 46710 0.69 0.622234
Target:  5'- uGCggGGCGgGGUCCUCGGCgAguggGCCg -3'
miRNA:   3'- gCGagCUGCgUUAGGAGCCGgU----UGGg -5'
18504 3' -56.2 NC_004681.1 + 46788 0.67 0.73732
Target:  5'- uGCUCGuuGCGggaGUCCUUGGagaUGGCCUg -3'
miRNA:   3'- gCGAGCugCGU---UAGGAGCCg--GUUGGG- -5'
18504 3' -56.2 NC_004681.1 + 46822 0.68 0.664619
Target:  5'- gCGCUacgaGACGCAGcCCcgCGGCaaccGCCCc -3'
miRNA:   3'- -GCGAg---CUGCGUUaGGa-GCCGgu--UGGG- -5'
18504 3' -56.2 NC_004681.1 + 47225 0.73 0.377147
Target:  5'- aGUUCGGCGCGGcCCUCGGCguuCUCg -3'
miRNA:   3'- gCGAGCUGCGUUaGGAGCCGguuGGG- -5'
18504 3' -56.2 NC_004681.1 + 48366 0.71 0.487867
Target:  5'- aGU---GCGCGGUCuuCUCGGUCAGCCCg -3'
miRNA:   3'- gCGagcUGCGUUAG--GAGCCGGUUGGG- -5'
18504 3' -56.2 NC_004681.1 + 49676 0.72 0.449141
Target:  5'- cCGCcUGAUGCAGUcguuggugCCUCgGGCCuGCCCg -3'
miRNA:   3'- -GCGaGCUGCGUUA--------GGAG-CCGGuUGGG- -5'
18504 3' -56.2 NC_004681.1 + 51058 0.67 0.725102
Target:  5'- gGCgUCGGCGUAGguguagccgaaCUUGGCCAGCgCg -3'
miRNA:   3'- gCG-AGCUGCGUUag---------GAGCCGGUUGgG- -5'
18504 3' -56.2 NC_004681.1 + 51172 0.7 0.538348
Target:  5'- cCGC-CGAgucaGCAGUCCUCGGC--GCCa -3'
miRNA:   3'- -GCGaGCUg---CGUUAGGAGCCGguUGGg -5'
18504 3' -56.2 NC_004681.1 + 52268 0.66 0.75736
Target:  5'- gGCcgCGACGCGgacguuGUCCUCcuccuccagaaGGCCGACg- -3'
miRNA:   3'- gCGa-GCUGCGU------UAGGAG-----------CCGGUUGgg -5'
18504 3' -56.2 NC_004681.1 + 52635 0.69 0.590498
Target:  5'- aGCgUCGAagGCug-CCUCGGCCAAgUCg -3'
miRNA:   3'- gCG-AGCUg-CGuuaGGAGCCGGUUgGG- -5'
18504 3' -56.2 NC_004681.1 + 52847 0.67 0.73732
Target:  5'- aGCUUccgGGCGgAAggcuggCCaUCGGCCuGCCCg -3'
miRNA:   3'- gCGAG---CUGCgUUa-----GG-AGCCGGuUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.