miRNA display CGI


Results 61 - 80 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18504 3' -56.2 NC_004681.1 + 52969 0.71 0.497795
Target:  5'- gGCUCGggcACGCGGgcaggCCgauGGCCAGCCUu -3'
miRNA:   3'- gCGAGC---UGCGUUa----GGag-CCGGUUGGG- -5'
18504 3' -56.2 NC_004681.1 + 54496 0.66 0.747394
Target:  5'- gCGCUUGACGuCGAccaCCUCGaacuCCAcACCCa -3'
miRNA:   3'- -GCGAGCUGC-GUUa--GGAGCc---GGU-UGGG- -5'
18504 3' -56.2 NC_004681.1 + 54890 0.69 0.569489
Target:  5'- -aCUCGACGguGUCUgcgCGGCaggugucgucaCGACCCg -3'
miRNA:   3'- gcGAGCUGCguUAGGa--GCCG-----------GUUGGG- -5'
18504 3' -56.2 NC_004681.1 + 54969 0.67 0.696142
Target:  5'- aGCUUGuugcCGCGgucGUCCUUGGCguCAGCCg -3'
miRNA:   3'- gCGAGCu---GCGU---UAGGAGCCG--GUUGGg -5'
18504 3' -56.2 NC_004681.1 + 55841 0.7 0.552816
Target:  5'- uGCUCGugGUAuuugCCUUGGCUacgaaugagcguggaGACCUu -3'
miRNA:   3'- gCGAGCugCGUua--GGAGCCGG---------------UUGGG- -5'
18504 3' -56.2 NC_004681.1 + 56313 0.68 0.664619
Target:  5'- gGgUCGACGcCGGUCCa-GGCCAccgACUCa -3'
miRNA:   3'- gCgAGCUGC-GUUAGGagCCGGU---UGGG- -5'
18504 3' -56.2 NC_004681.1 + 56565 0.66 0.776924
Target:  5'- aGUUCGAUGUcGUCUaCGGCU--CCCg -3'
miRNA:   3'- gCGAGCUGCGuUAGGaGCCGGuuGGG- -5'
18504 3' -56.2 NC_004681.1 + 57685 1.12 0.000785
Target:  5'- gCGCUCGACGCAAUCCUCGGCCAACCCg -3'
miRNA:   3'- -GCGAGCUGCGUUAGGAGCCGGUUGGG- -5'
18504 3' -56.2 NC_004681.1 + 60144 0.7 0.559052
Target:  5'- uCGCUCGACGU-AUCCaaGGCCAuugacaagGCUg -3'
miRNA:   3'- -GCGAGCUGCGuUAGGagCCGGU--------UGGg -5'
18504 3' -56.2 NC_004681.1 + 60677 0.69 0.622234
Target:  5'- cCGCUCGugauggUGCGGUCUaCGGCCGuCUCg -3'
miRNA:   3'- -GCGAGCu-----GCGUUAGGaGCCGGUuGGG- -5'
18504 3' -56.2 NC_004681.1 + 62674 0.66 0.767207
Target:  5'- cCGcCUCGGCGCGcUCC-CGGCgu-UCCa -3'
miRNA:   3'- -GC-GAGCUGCGUuAGGaGCCGguuGGG- -5'
18504 3' -56.2 NC_004681.1 + 63411 0.74 0.328493
Target:  5'- gGCUCGACuGCGGUCCUgaauucccUGGCC-ACCa -3'
miRNA:   3'- gCGAGCUG-CGUUAGGA--------GCCGGuUGGg -5'
18504 3' -56.2 NC_004681.1 + 63736 0.66 0.786503
Target:  5'- gCGCUaCGGCGC---CCUCGGUacGCCa -3'
miRNA:   3'- -GCGA-GCUGCGuuaGGAGCCGguUGGg -5'
18504 3' -56.2 NC_004681.1 + 65788 0.7 0.517914
Target:  5'- aGUUCGucCGUcucggCCUCGGCCGcCCCa -3'
miRNA:   3'- gCGAGCu-GCGuua--GGAGCCGGUuGGG- -5'
18504 3' -56.2 NC_004681.1 + 67040 0.68 0.63284
Target:  5'- aGCUCGGCGCGcggcaCCagGGCC-GCCa -3'
miRNA:   3'- gCGAGCUGCGUua---GGagCCGGuUGGg -5'
18504 3' -56.2 NC_004681.1 + 67214 0.69 0.622234
Target:  5'- cCGCcCGugGUggUCUcauUCgGGCCGuaGCCCa -3'
miRNA:   3'- -GCGaGCugCGuuAGG---AG-CCGGU--UGGG- -5'
18504 3' -56.2 NC_004681.1 + 67397 0.66 0.767207
Target:  5'- uCGCUCaGgGCAagcccaaggccGUCCaguggcucaaGGCCAACCCg -3'
miRNA:   3'- -GCGAGcUgCGU-----------UAGGag--------CCGGUUGGG- -5'
18504 3' -56.2 NC_004681.1 + 67716 0.69 0.601054
Target:  5'- cCGCU-GGCGCua-CCgcaUGGCCAACCUg -3'
miRNA:   3'- -GCGAgCUGCGuuaGGa--GCCGGUUGGG- -5'
18504 3' -56.2 NC_004681.1 + 67912 0.66 0.795932
Target:  5'- aCGCaCGACGCuGUCauaggGGCCGaacacGCCCg -3'
miRNA:   3'- -GCGaGCUGCGuUAGgag--CCGGU-----UGGG- -5'
18504 3' -56.2 NC_004681.1 + 68513 0.66 0.795932
Target:  5'- gGCUCG-CgGCAcgCCUgGgcGCCAugCCg -3'
miRNA:   3'- gCGAGCuG-CGUuaGGAgC--CGGUugGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.