miRNA display CGI


Results 61 - 80 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18504 3' -56.2 NC_004681.1 + 18796 0.69 0.569489
Target:  5'- uGCUCGAUGUugacgagaGGUCCaggCGGCUG-CCCg -3'
miRNA:   3'- gCGAGCUGCG--------UUAGGa--GCCGGUuGGG- -5'
18504 3' -56.2 NC_004681.1 + 17203 0.66 0.747394
Target:  5'- aCGCgcc-CGCGAUCUUCuGGCCcaucugAGCCCa -3'
miRNA:   3'- -GCGagcuGCGUUAGGAG-CCGG------UUGGG- -5'
18504 3' -56.2 NC_004681.1 + 16977 0.67 0.696142
Target:  5'- uGCUCcaauugcguuACGCGAgcacgcUUCUCGGCCAGCUUg -3'
miRNA:   3'- gCGAGc---------UGCGUU------AGGAGCCGGUUGGG- -5'
18504 3' -56.2 NC_004681.1 + 16919 0.75 0.282571
Target:  5'- aGCUCGAcucCGCGgaguacaccgagggGUCCUCGGgCAugCCg -3'
miRNA:   3'- gCGAGCU---GCGU--------------UAGGAGCCgGUugGG- -5'
18504 3' -56.2 NC_004681.1 + 16824 0.68 0.675168
Target:  5'- aGCUUGACGguG-CCaUCGcuGCCAccGCCCg -3'
miRNA:   3'- gCGAGCUGCguUaGG-AGC--CGGU--UGGG- -5'
18504 3' -56.2 NC_004681.1 + 16166 0.75 0.298722
Target:  5'- uCGCUCaucGCGCuGUCCUCGGCCAuCUUc -3'
miRNA:   3'- -GCGAGc--UGCGuUAGGAGCCGGUuGGG- -5'
18504 3' -56.2 NC_004681.1 + 15379 0.66 0.75736
Target:  5'- uCGC-CGACGCcAUCCagaaCGGC--ACCCu -3'
miRNA:   3'- -GCGaGCUGCGuUAGGa---GCCGguUGGG- -5'
18504 3' -56.2 NC_004681.1 + 14528 0.73 0.368709
Target:  5'- uCGCgggCGGCGUAGauuuucgCCUCGGCC-GCCUg -3'
miRNA:   3'- -GCGa--GCUGCGUUa------GGAGCCGGuUGGG- -5'
18504 3' -56.2 NC_004681.1 + 12810 0.66 0.776924
Target:  5'- cCGuCUCaGugGCAc-CCUCGauGCCAGCCUc -3'
miRNA:   3'- -GC-GAG-CugCGUuaGGAGC--CGGUUGGG- -5'
18504 3' -56.2 NC_004681.1 + 12398 0.67 0.685679
Target:  5'- cCGCggCGACGC--UCgUCGGUgAGCCg -3'
miRNA:   3'- -GCGa-GCUGCGuuAGgAGCCGgUUGGg -5'
18504 3' -56.2 NC_004681.1 + 12188 0.69 0.611636
Target:  5'- aCGCgCGG-GCGGaCCUCGGCCAcguACUCg -3'
miRNA:   3'- -GCGaGCUgCGUUaGGAGCCGGU---UGGG- -5'
18504 3' -56.2 NC_004681.1 + 8988 0.76 0.251732
Target:  5'- uGUUCGGCGCca-CCUCGGCC-ACCg -3'
miRNA:   3'- gCGAGCUGCGuuaGGAGCCGGuUGGg -5'
18504 3' -56.2 NC_004681.1 + 8951 0.68 0.675168
Target:  5'- gCGUUCGAC-CGGcuucaccgccUCCUCGGCCu-CUCg -3'
miRNA:   3'- -GCGAGCUGcGUU----------AGGAGCCGGuuGGG- -5'
18504 3' -56.2 NC_004681.1 + 8437 0.68 0.661448
Target:  5'- aGUUCGACGUcucguucaacgugaGcgCCaaggCGGCUGACCCc -3'
miRNA:   3'- gCGAGCUGCG--------------UuaGGa---GCCGGUUGGG- -5'
18504 3' -56.2 NC_004681.1 + 8339 0.72 0.430424
Target:  5'- gCGCUCGuGCGCcucgaCCUCGGCCuggugGGCCUu -3'
miRNA:   3'- -GCGAGC-UGCGuua--GGAGCCGG-----UUGGG- -5'
18504 3' -56.2 NC_004681.1 + 7454 0.66 0.785551
Target:  5'- gGCUUGGCGgGAggCUUCgccgcggcggcggGGUCAGCCCc -3'
miRNA:   3'- gCGAGCUGCgUUa-GGAG-------------CCGGUUGGG- -5'
18504 3' -56.2 NC_004681.1 + 6884 0.71 0.497795
Target:  5'- cCGCUCGACGuCGaccacggcauGUCCgUGGCCAccACCg -3'
miRNA:   3'- -GCGAGCUGC-GU----------UAGGaGCCGGU--UGGg -5'
18504 3' -56.2 NC_004681.1 + 6867 0.66 0.747394
Target:  5'- cCGCcaUUGGggcCGUAGUCCuucUCGGCCGACUg -3'
miRNA:   3'- -GCG--AGCU---GCGUUAGG---AGCCGGUUGGg -5'
18504 3' -56.2 NC_004681.1 + 5416 0.66 0.776924
Target:  5'- gGCU--ACGCGAaaCUgcUGGCCGACCCc -3'
miRNA:   3'- gCGAgcUGCGUUagGA--GCCGGUUGGG- -5'
18504 3' -56.2 NC_004681.1 + 3500 0.74 0.344182
Target:  5'- gGCUCG-CGCGGgcgCCgCGGCCAACUUc -3'
miRNA:   3'- gCGAGCuGCGUUa--GGaGCCGGUUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.