miRNA display CGI


Results 21 - 40 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18504 3' -56.2 NC_004681.1 + 42019 0.68 0.664619
Target:  5'- --gUCGACGCcaaCCUCGugcgcGCCAACCUg -3'
miRNA:   3'- gcgAGCUGCGuuaGGAGC-----CGGUUGGG- -5'
18504 3' -56.2 NC_004681.1 + 40511 0.71 0.478033
Target:  5'- uGCcCGACGUAGUCCUCgaGGUUGuauuGCCCg -3'
miRNA:   3'- gCGaGCUGCGUUAGGAG--CCGGU----UGGG- -5'
18504 3' -56.2 NC_004681.1 + 38907 0.71 0.468298
Target:  5'- uGCUggCGugGguCAAUCCaUGGCCAGCCUg -3'
miRNA:   3'- gCGA--GCugC--GUUAGGaGCCGGUUGGG- -5'
18504 3' -56.2 NC_004681.1 + 34718 0.72 0.411273
Target:  5'- gGCUUGGgaauuccCGCGcgCUUCGGCCGccGCCCc -3'
miRNA:   3'- gCGAGCU-------GCGUuaGGAGCCGGU--UGGG- -5'
18504 3' -56.2 NC_004681.1 + 41993 0.73 0.368709
Target:  5'- aCGCg-GGgGCGAU-CUCGGCCAGCCUu -3'
miRNA:   3'- -GCGagCUgCGUUAgGAGCCGGUUGGG- -5'
18504 3' -56.2 NC_004681.1 + 63411 0.74 0.328493
Target:  5'- gGCUCGACuGCGGUCCUgaauucccUGGCC-ACCa -3'
miRNA:   3'- gCGAGCUG-CGUUAGGA--------GCCGGuUGGg -5'
18504 3' -56.2 NC_004681.1 + 16166 0.75 0.298722
Target:  5'- uCGCUCaucGCGCuGUCCUCGGCCAuCUUc -3'
miRNA:   3'- -GCGAGc--UGCGuUAGGAGCCGGUuGGG- -5'
18504 3' -56.2 NC_004681.1 + 8988 0.76 0.251732
Target:  5'- uGUUCGGCGCca-CCUCGGCC-ACCg -3'
miRNA:   3'- gCGAGCUGCGuuaGGAGCCGGuUGGg -5'
18504 3' -56.2 NC_004681.1 + 57685 1.12 0.000785
Target:  5'- gCGCUCGACGCAAUCCUCGGCCAACCCg -3'
miRNA:   3'- -GCGAGCUGCGUUAGGAGCCGGUUGGG- -5'
18504 3' -56.2 NC_004681.1 + 6884 0.71 0.497795
Target:  5'- cCGCUCGACGuCGaccacggcauGUCCgUGGCCAccACCg -3'
miRNA:   3'- -GCGAGCUGC-GU----------UAGGaGCCGGU--UGGg -5'
18504 3' -56.2 NC_004681.1 + 65788 0.7 0.517914
Target:  5'- aGUUCGucCGUcucggCCUCGGCCGcCCCa -3'
miRNA:   3'- gCGAGCu-GCGuua--GGAGCCGGUuGGG- -5'
18504 3' -56.2 NC_004681.1 + 27133 0.68 0.664619
Target:  5'- gGCUCGuccUGCAagcGUUCUCGGCgGGCUa -3'
miRNA:   3'- gCGAGCu--GCGU---UAGGAGCCGgUUGGg -5'
18504 3' -56.2 NC_004681.1 + 8437 0.68 0.661448
Target:  5'- aGUUCGACGUcucguucaacgugaGcgCCaaggCGGCUGACCCc -3'
miRNA:   3'- gCGAGCUGCG--------------UuaGGa---GCCGGUUGGG- -5'
18504 3' -56.2 NC_004681.1 + 75491 0.68 0.63284
Target:  5'- cCGCUCagcaGACGCGAgcucauacgCCagaGGCuCAACCCg -3'
miRNA:   3'- -GCGAG----CUGCGUUa--------GGag-CCG-GUUGGG- -5'
18504 3' -56.2 NC_004681.1 + 60677 0.69 0.622234
Target:  5'- cCGCUCGugauggUGCGGUCUaCGGCCGuCUCg -3'
miRNA:   3'- -GCGAGCu-----GCGUUAGGaGCCGGUuGGG- -5'
18504 3' -56.2 NC_004681.1 + 71733 0.69 0.611636
Target:  5'- aCGCUCcgcGCGUAGUCCUCcgGGUCAAUUg -3'
miRNA:   3'- -GCGAGc--UGCGUUAGGAG--CCGGUUGGg -5'
18504 3' -56.2 NC_004681.1 + 67716 0.69 0.601054
Target:  5'- cCGCU-GGCGCua-CCgcaUGGCCAACCUg -3'
miRNA:   3'- -GCGAgCUGCGuuaGGa--GCCGGUUGGG- -5'
18504 3' -56.2 NC_004681.1 + 60144 0.7 0.559052
Target:  5'- uCGCUCGACGU-AUCCaaGGCCAuugacaagGCUg -3'
miRNA:   3'- -GCGAGCUGCGuUAGGagCCGGU--------UGGg -5'
18504 3' -56.2 NC_004681.1 + 51172 0.7 0.538348
Target:  5'- cCGC-CGAgucaGCAGUCCUCGGC--GCCa -3'
miRNA:   3'- -GCGaGCUg---CGUUAGGAGCCGguUGGg -5'
18504 3' -56.2 NC_004681.1 + 67912 0.66 0.795932
Target:  5'- aCGCaCGACGCuGUCauaggGGCCGaacacGCCCg -3'
miRNA:   3'- -GCGaGCUGCGuUAGgag--CCGGU-----UGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.