Results 61 - 80 of 85 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18504 | 3' | -56.2 | NC_004681.1 | + | 18796 | 0.69 | 0.569489 |
Target: 5'- uGCUCGAUGUugacgagaGGUCCaggCGGCUG-CCCg -3' miRNA: 3'- gCGAGCUGCG--------UUAGGa--GCCGGUuGGG- -5' |
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18504 | 3' | -56.2 | NC_004681.1 | + | 3346 | 0.72 | 0.430424 |
Target: 5'- aGCgagCGagccaggaagaGCGCAG-CCUCGGCCAGguCCCg -3' miRNA: 3'- gCGa--GC-----------UGCGUUaGGAGCCGGUU--GGG- -5' |
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18504 | 3' | -56.2 | NC_004681.1 | + | 47225 | 0.73 | 0.377147 |
Target: 5'- aGUUCGGCGCGGcCCUCGGCguuCUCg -3' miRNA: 3'- gCGAGCUGCGUUaGGAGCCGguuGGG- -5' |
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18504 | 3' | -56.2 | NC_004681.1 | + | 38319 | 0.73 | 0.368709 |
Target: 5'- gCGC-CGcCGCGggacGUCUUCGGCCGcCCCa -3' miRNA: 3'- -GCGaGCuGCGU----UAGGAGCCGGUuGGG- -5' |
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18504 | 3' | -56.2 | NC_004681.1 | + | 14528 | 0.73 | 0.368709 |
Target: 5'- uCGCgggCGGCGUAGauuuucgCCUCGGCC-GCCUg -3' miRNA: 3'- -GCGa--GCUGCGUUa------GGAGCCGGuUGGG- -5' |
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18504 | 3' | -56.2 | NC_004681.1 | + | 3500 | 0.74 | 0.344182 |
Target: 5'- gGCUCG-CGCGGgcgCCgCGGCCAACUUc -3' miRNA: 3'- gCGAGCuGCGUUa--GGaGCCGGUUGGG- -5' |
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18504 | 3' | -56.2 | NC_004681.1 | + | 586 | 0.74 | 0.336271 |
Target: 5'- aGCUUGACGCccagcaUCUCGGCCAggcGCCUc -3' miRNA: 3'- gCGAGCUGCGuua---GGAGCCGGU---UGGG- -5' |
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18504 | 3' | -56.2 | NC_004681.1 | + | 16919 | 0.75 | 0.282571 |
Target: 5'- aGCUCGAcucCGCGgaguacaccgagggGUCCUCGGgCAugCCg -3' miRNA: 3'- gCGAGCU---GCGU--------------UAGGAGCCgGUugGG- -5' |
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18504 | 3' | -56.2 | NC_004681.1 | + | 39671 | 0.76 | 0.264504 |
Target: 5'- uCGUcCGAUGCGAgcUCCUCGGCCGcGCUCu -3' miRNA: 3'- -GCGaGCUGCGUU--AGGAGCCGGU-UGGG- -5' |
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18504 | 3' | -56.2 | NC_004681.1 | + | 8339 | 0.72 | 0.430424 |
Target: 5'- gCGCUCGuGCGCcucgaCCUCGGCCuggugGGCCUu -3' miRNA: 3'- -GCGAGC-UGCGuua--GGAGCCGG-----UUGGG- -5' |
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18504 | 3' | -56.2 | NC_004681.1 | + | 49676 | 0.72 | 0.449141 |
Target: 5'- cCGCcUGAUGCAGUcguuggugCCUCgGGCCuGCCCg -3' miRNA: 3'- -GCGaGCUGCGUUA--------GGAG-CCGGuUGGG- -5' |
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18504 | 3' | -56.2 | NC_004681.1 | + | 48366 | 0.71 | 0.487867 |
Target: 5'- aGU---GCGCGGUCuuCUCGGUCAGCCCg -3' miRNA: 3'- gCGagcUGCGUUAG--GAGCCGGUUGGG- -5' |
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18504 | 3' | -56.2 | NC_004681.1 | + | 54890 | 0.69 | 0.569489 |
Target: 5'- -aCUCGACGguGUCUgcgCGGCaggugucgucaCGACCCg -3' miRNA: 3'- gcGAGCUGCguUAGGa--GCCG-----------GUUGGG- -5' |
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18504 | 3' | -56.2 | NC_004681.1 | + | 55841 | 0.7 | 0.552816 |
Target: 5'- uGCUCGugGUAuuugCCUUGGCUacgaaugagcguggaGACCUu -3' miRNA: 3'- gCGAGCugCGUua--GGAGCCGG---------------UUGGG- -5' |
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18504 | 3' | -56.2 | NC_004681.1 | + | 39092 | 0.7 | 0.538348 |
Target: 5'- aCGUU-GACGCcuUCCucgUCGGCC-ACCCa -3' miRNA: 3'- -GCGAgCUGCGuuAGG---AGCCGGuUGGG- -5' |
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18504 | 3' | -56.2 | NC_004681.1 | + | 18949 | 0.7 | 0.517914 |
Target: 5'- uGCgUCGAUGUAuUCCUUcGCCAGCuCCg -3' miRNA: 3'- gCG-AGCUGCGUuAGGAGcCGGUUG-GG- -5' |
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18504 | 3' | -56.2 | NC_004681.1 | + | 41069 | 0.7 | 0.507812 |
Target: 5'- aGCUCGGCGaGGUCaa-GGCCAugCUg -3' miRNA: 3'- gCGAGCUGCgUUAGgagCCGGUugGG- -5' |
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18504 | 3' | -56.2 | NC_004681.1 | + | 44077 | 0.71 | 0.497795 |
Target: 5'- uGUUUGACGU---CCUCGGCCAugggguACCUa -3' miRNA: 3'- gCGAGCUGCGuuaGGAGCCGGU------UGGG- -5' |
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18504 | 3' | -56.2 | NC_004681.1 | + | 52969 | 0.71 | 0.497795 |
Target: 5'- gGCUCGggcACGCGGgcaggCCgauGGCCAGCCUu -3' miRNA: 3'- gCGAGC---UGCGUUa----GGag-CCGGUUGGG- -5' |
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18504 | 3' | -56.2 | NC_004681.1 | + | 69382 | 0.71 | 0.497795 |
Target: 5'- aGCUCGuccACGCGGUCCaUCaGaUCGGCCCa -3' miRNA: 3'- gCGAGC---UGCGUUAGG-AGcC-GGUUGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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