miRNA display CGI


Results 21 - 40 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18504 3' -56.2 NC_004681.1 + 69740 0.69 0.590498
Target:  5'- -cUUUGGagaAAUUCUCGGCCGACCCg -3'
miRNA:   3'- gcGAGCUgcgUUAGGAGCCGGUUGGG- -5'
18504 3' -56.2 NC_004681.1 + 52635 0.69 0.590498
Target:  5'- aGCgUCGAagGCug-CCUCGGCCAAgUCg -3'
miRNA:   3'- gCG-AGCUg-CGuuaGGAGCCGGUUgGG- -5'
18504 3' -56.2 NC_004681.1 + 69382 0.71 0.497795
Target:  5'- aGCUCGuccACGCGGUCCaUCaGaUCGGCCCa -3'
miRNA:   3'- gCGAGC---UGCGUUAGG-AGcC-GGUUGGG- -5'
18504 3' -56.2 NC_004681.1 + 14528 0.73 0.368709
Target:  5'- uCGCgggCGGCGUAGauuuucgCCUCGGCC-GCCUg -3'
miRNA:   3'- -GCGa--GCUGCGUUa------GGAGCCGGuUGGG- -5'
18504 3' -56.2 NC_004681.1 + 22114 0.67 0.706549
Target:  5'- gCGCUCG-CGCuGUCCUUGaagaCGACCUu -3'
miRNA:   3'- -GCGAGCuGCGuUAGGAGCcg--GUUGGG- -5'
18504 3' -56.2 NC_004681.1 + 39921 0.68 0.654042
Target:  5'- gCGCgCGGUGCGGUCCaCGGUCuuGCCCc -3'
miRNA:   3'- -GCGaGCUGCGUUAGGaGCCGGu-UGGG- -5'
18504 3' -56.2 NC_004681.1 + 54890 0.69 0.569489
Target:  5'- -aCUCGACGguGUCUgcgCGGCaggugucgucaCGACCCg -3'
miRNA:   3'- gcGAGCUGCguUAGGa--GCCG-----------GUUGGG- -5'
18504 3' -56.2 NC_004681.1 + 3500 0.74 0.344182
Target:  5'- gGCUCG-CGCGGgcgCCgCGGCCAACUUc -3'
miRNA:   3'- gCGAGCuGCGUUa--GGaGCCGGUUGGG- -5'
18504 3' -56.2 NC_004681.1 + 67040 0.68 0.63284
Target:  5'- aGCUCGGCGCGcggcaCCagGGCC-GCCa -3'
miRNA:   3'- gCGAGCUGCGUua---GGagCCGGuUGGg -5'
18504 3' -56.2 NC_004681.1 + 586 0.74 0.336271
Target:  5'- aGCUUGACGCccagcaUCUCGGCCAggcGCCUc -3'
miRNA:   3'- gCGAGCUGCGuua---GGAGCCGGU---UGGG- -5'
18504 3' -56.2 NC_004681.1 + 18796 0.69 0.569489
Target:  5'- uGCUCGAUGUugacgagaGGUCCaggCGGCUG-CCCg -3'
miRNA:   3'- gCGAGCUGCG--------UUAGGa--GCCGGUuGGG- -5'
18504 3' -56.2 NC_004681.1 + 12188 0.69 0.611636
Target:  5'- aCGCgCGG-GCGGaCCUCGGCCAcguACUCg -3'
miRNA:   3'- -GCGaGCUgCGUUaGGAGCCGGU---UGGG- -5'
18504 3' -56.2 NC_004681.1 + 18949 0.7 0.517914
Target:  5'- uGCgUCGAUGUAuUCCUUcGCCAGCuCCg -3'
miRNA:   3'- gCG-AGCUGCGUuAGGAGcCGGUUG-GG- -5'
18504 3' -56.2 NC_004681.1 + 52969 0.71 0.497795
Target:  5'- gGCUCGggcACGCGGgcaggCCgauGGCCAGCCUu -3'
miRNA:   3'- gCGAGC---UGCGUUa----GGag-CCGGUUGGG- -5'
18504 3' -56.2 NC_004681.1 + 8339 0.72 0.430424
Target:  5'- gCGCUCGuGCGCcucgaCCUCGGCCuggugGGCCUu -3'
miRNA:   3'- -GCGAGC-UGCGuua--GGAGCCGG-----UUGGG- -5'
18504 3' -56.2 NC_004681.1 + 38319 0.73 0.368709
Target:  5'- gCGC-CGcCGCGggacGUCUUCGGCCGcCCCa -3'
miRNA:   3'- -GCGaGCuGCGU----UAGGAGCCGGUuGGG- -5'
18504 3' -56.2 NC_004681.1 + 33465 0.66 0.747394
Target:  5'- gCGCgcgCGACGCGGccggUCUCaGCCAGCg- -3'
miRNA:   3'- -GCGa--GCUGCGUUa---GGAGcCGGUUGgg -5'
18504 3' -56.2 NC_004681.1 + 51058 0.67 0.725102
Target:  5'- gGCgUCGGCGUAGguguagccgaaCUUGGCCAGCgCg -3'
miRNA:   3'- gCG-AGCUGCGUUag---------GAGCCGGUUGgG- -5'
18504 3' -56.2 NC_004681.1 + 54969 0.67 0.696142
Target:  5'- aGCUUGuugcCGCGgucGUCCUUGGCguCAGCCg -3'
miRNA:   3'- gCGAGCu---GCGU---UAGGAGCCG--GUUGGg -5'
18504 3' -56.2 NC_004681.1 + 21291 0.68 0.654042
Target:  5'- aGUggCGACGCuGUCCauUCGGCCGuuaaucgaaAUCCa -3'
miRNA:   3'- gCGa-GCUGCGuUAGG--AGCCGGU---------UGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.