miRNA display CGI


Results 41 - 60 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18504 3' -56.2 NC_004681.1 + 12188 0.69 0.611636
Target:  5'- aCGCgCGG-GCGGaCCUCGGCCAcguACUCg -3'
miRNA:   3'- -GCGaGCUgCGUUaGGAGCCGGU---UGGG- -5'
18504 3' -56.2 NC_004681.1 + 46710 0.69 0.622234
Target:  5'- uGCggGGCGgGGUCCUCGGCgAguggGCCg -3'
miRNA:   3'- gCGagCUGCgUUAGGAGCCGgU----UGGg -5'
18504 3' -56.2 NC_004681.1 + 17203 0.66 0.747394
Target:  5'- aCGCgcc-CGCGAUCUUCuGGCCcaucugAGCCCa -3'
miRNA:   3'- -GCGagcuGCGUUAGGAG-CCGG------UUGGG- -5'
18504 3' -56.2 NC_004681.1 + 54496 0.66 0.747394
Target:  5'- gCGCUUGACGuCGAccaCCUCGaacuCCAcACCCa -3'
miRNA:   3'- -GCGAGCUGC-GUUa--GGAGCc---GGU-UGGG- -5'
18504 3' -56.2 NC_004681.1 + 67912 0.66 0.795932
Target:  5'- aCGCaCGACGCuGUCauaggGGCCGaacacGCCCg -3'
miRNA:   3'- -GCGaGCUGCGuUAGgag--CCGGU-----UGGG- -5'
18504 3' -56.2 NC_004681.1 + 12810 0.66 0.776924
Target:  5'- cCGuCUCaGugGCAc-CCUCGauGCCAGCCUc -3'
miRNA:   3'- -GC-GAG-CugCGUuaGGAGC--CGGUUGGG- -5'
18504 3' -56.2 NC_004681.1 + 34718 0.72 0.411273
Target:  5'- gGCUUGGgaauuccCGCGcgCUUCGGCCGccGCCCc -3'
miRNA:   3'- gCGAGCU-------GCGUuaGGAGCCGGU--UGGG- -5'
18504 3' -56.2 NC_004681.1 + 44966 0.66 0.764266
Target:  5'- gGCUCaGGCcCAaugagcccugcugcAUCCUCGGCCucgugggcgucGCCCg -3'
miRNA:   3'- gCGAG-CUGcGU--------------UAGGAGCCGGu----------UGGG- -5'
18504 3' -56.2 NC_004681.1 + 16166 0.75 0.298722
Target:  5'- uCGCUCaucGCGCuGUCCUCGGCCAuCUUc -3'
miRNA:   3'- -GCGAGc--UGCGuUAGGAGCCGGUuGGG- -5'
18504 3' -56.2 NC_004681.1 + 38907 0.71 0.468298
Target:  5'- uGCUggCGugGguCAAUCCaUGGCCAGCCUg -3'
miRNA:   3'- gCGA--GCugC--GUUAGGaGCCGGUUGGG- -5'
18504 3' -56.2 NC_004681.1 + 60144 0.7 0.559052
Target:  5'- uCGCUCGACGU-AUCCaaGGCCAuugacaagGCUg -3'
miRNA:   3'- -GCGAGCUGCGuUAGGagCCGGU--------UGGg -5'
18504 3' -56.2 NC_004681.1 + 15379 0.66 0.75736
Target:  5'- uCGC-CGACGCcAUCCagaaCGGC--ACCCu -3'
miRNA:   3'- -GCGaGCUGCGuUAGGa---GCCGguUGGG- -5'
18504 3' -56.2 NC_004681.1 + 29135 0.66 0.747394
Target:  5'- cCGCgucaggCGugGCGA-CCUCaacGGCCAcgucaacgaccaACCCc -3'
miRNA:   3'- -GCGa-----GCugCGUUaGGAG---CCGGU------------UGGG- -5'
18504 3' -56.2 NC_004681.1 + 52847 0.67 0.73732
Target:  5'- aGCUUccgGGCGgAAggcuggCCaUCGGCCuGCCCg -3'
miRNA:   3'- gCGAG---CUGCgUUa-----GG-AGCCGGuUGGG- -5'
18504 3' -56.2 NC_004681.1 + 43704 0.67 0.727148
Target:  5'- cCGC-CGcCGCAGUacaccgccgcCCUCGGUgAACUCg -3'
miRNA:   3'- -GCGaGCuGCGUUA----------GGAGCCGgUUGGG- -5'
18504 3' -56.2 NC_004681.1 + 643 0.67 0.727148
Target:  5'- gGUgaUCGACGcCGAUCC--GGUCGACCUg -3'
miRNA:   3'- gCG--AGCUGC-GUUAGGagCCGGUUGGG- -5'
18504 3' -56.2 NC_004681.1 + 26783 0.67 0.717917
Target:  5'- gGCUCGGCGguGguucugucaacuucaCCgcggCGGCCAACgCu -3'
miRNA:   3'- gCGAGCUGCguUa--------------GGa---GCCGGUUGgG- -5'
18504 3' -56.2 NC_004681.1 + 60677 0.69 0.622234
Target:  5'- cCGCUCGugauggUGCGGUCUaCGGCCGuCUCg -3'
miRNA:   3'- -GCGAGCu-----GCGUUAGGaGCCGGUuGGG- -5'
18504 3' -56.2 NC_004681.1 + 71733 0.69 0.611636
Target:  5'- aCGCUCcgcGCGUAGUCCUCcgGGUCAAUUg -3'
miRNA:   3'- -GCGAGc--UGCGUUAGGAG--CCGGUUGGg -5'
18504 3' -56.2 NC_004681.1 + 67716 0.69 0.601054
Target:  5'- cCGCU-GGCGCua-CCgcaUGGCCAACCUg -3'
miRNA:   3'- -GCGAgCUGCGuuaGGa--GCCGGUUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.