miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18505 3' -54.4 NC_004681.1 + 49463 0.66 0.860308
Target:  5'- -cACGCAGaaggugugcgCCCAGuggucagCGCCCGcgGCGCc -3'
miRNA:   3'- guUGCGUUa---------GGGUCua-----GCGGGC--UGCG- -5'
18505 3' -54.4 NC_004681.1 + 17719 0.66 0.852142
Target:  5'- gCGACGUGAaCgCgGGGUCGUCCG-CGCc -3'
miRNA:   3'- -GUUGCGUUaG-GgUCUAGCGGGCuGCG- -5'
18505 3' -54.4 NC_004681.1 + 12088 0.66 0.852142
Target:  5'- -uACGUGG-CCgAGGUcCGCCCG-CGCg -3'
miRNA:   3'- guUGCGUUaGGgUCUA-GCGGGCuGCG- -5'
18505 3' -54.4 NC_004681.1 + 33861 0.66 0.843756
Target:  5'- aUggUGCGGaagcUCCCAGccgCGCUCGGcCGCu -3'
miRNA:   3'- -GuuGCGUU----AGGGUCua-GCGGGCU-GCG- -5'
18505 3' -54.4 NC_004681.1 + 35032 0.66 0.843756
Target:  5'- -cGCGCAuauaCCAGAcUUGCUCGcCGCg -3'
miRNA:   3'- guUGCGUuag-GGUCU-AGCGGGCuGCG- -5'
18505 3' -54.4 NC_004681.1 + 57874 0.66 0.842906
Target:  5'- --uCGCGGUCuCCGGuggcgguGUCGCCUGAaGCu -3'
miRNA:   3'- guuGCGUUAG-GGUC-------UAGCGGGCUgCG- -5'
18505 3' -54.4 NC_004681.1 + 54516 0.66 0.835157
Target:  5'- uCGACGCAGcUCUGGAcgucgCGCuuGACGUc -3'
miRNA:   3'- -GUUGCGUUaGGGUCUa----GCGggCUGCG- -5'
18505 3' -54.4 NC_004681.1 + 62952 0.66 0.835157
Target:  5'- gCGGuCGCGGUCCUucucGGcgCGCUCGGUGCg -3'
miRNA:   3'- -GUU-GCGUUAGGG----UCuaGCGGGCUGCG- -5'
18505 3' -54.4 NC_004681.1 + 39211 0.66 0.835157
Target:  5'- ---gGCGGUCgCGGAaggugUUGCCCG-CGCa -3'
miRNA:   3'- guugCGUUAGgGUCU-----AGCGGGCuGCG- -5'
18505 3' -54.4 NC_004681.1 + 50258 0.66 0.835157
Target:  5'- aGGCGCuGUCCUGGucccgCGCCCacCGCa -3'
miRNA:   3'- gUUGCGuUAGGGUCua---GCGGGcuGCG- -5'
18505 3' -54.4 NC_004681.1 + 41346 0.66 0.835157
Target:  5'- aCAACGCAAauaCCCuGGUaggaCGUuuGACGUa -3'
miRNA:   3'- -GUUGCGUUa--GGGuCUA----GCGggCUGCG- -5'
18505 3' -54.4 NC_004681.1 + 36216 0.66 0.835157
Target:  5'- gCGGCGCA-----AGAUUGCCCG-CGCa -3'
miRNA:   3'- -GUUGCGUuagggUCUAGCGGGCuGCG- -5'
18505 3' -54.4 NC_004681.1 + 3210 0.66 0.832537
Target:  5'- -cGCGCGAUCCgauCAGGUaguccugcgggacgUGCuuGGCGCc -3'
miRNA:   3'- guUGCGUUAGG---GUCUA--------------GCGggCUGCG- -5'
18505 3' -54.4 NC_004681.1 + 6256 0.66 0.826353
Target:  5'- --uUGCGGaCCCAGuacUGUCCGACGUa -3'
miRNA:   3'- guuGCGUUaGGGUCua-GCGGGCUGCG- -5'
18505 3' -54.4 NC_004681.1 + 68714 0.66 0.826353
Target:  5'- uGACGCAGUgaCCAuGAUCGCUgGcacCGCg -3'
miRNA:   3'- gUUGCGUUAg-GGU-CUAGCGGgCu--GCG- -5'
18505 3' -54.4 NC_004681.1 + 24004 0.66 0.826353
Target:  5'- cCAGC-CAacAUCCuCGGGUgGUUCGGCGCg -3'
miRNA:   3'- -GUUGcGU--UAGG-GUCUAgCGGGCUGCG- -5'
18505 3' -54.4 NC_004681.1 + 74183 0.66 0.826353
Target:  5'- cCAGCGCAacguuucuGUCCgCAGuagGCCaCGACGUu -3'
miRNA:   3'- -GUUGCGU--------UAGG-GUCuagCGG-GCUGCG- -5'
18505 3' -54.4 NC_004681.1 + 59609 0.66 0.826353
Target:  5'- gAugGC-GUCaCCAGggCGCUCGACa- -3'
miRNA:   3'- gUugCGuUAG-GGUCuaGCGGGCUGcg -5'
18505 3' -54.4 NC_004681.1 + 5560 0.67 0.798805
Target:  5'- cCGAUGCAcccGUCaCGGGUCGCCaucaaGCGCa -3'
miRNA:   3'- -GUUGCGU---UAGgGUCUAGCGGgc---UGCG- -5'
18505 3' -54.4 NC_004681.1 + 32471 0.67 0.789276
Target:  5'- gGACGCAcaucuUCUCGGAUggcgugaaGCgCGACGCg -3'
miRNA:   3'- gUUGCGUu----AGGGUCUAg-------CGgGCUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.