miRNA display CGI


Results 1 - 20 of 53 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18505 3' -54.4 NC_004681.1 + 762 0.68 0.749694
Target:  5'- uCGACGUAGUCagcguCCAGGUCGaCCggauCGGCGUc -3'
miRNA:   3'- -GUUGCGUUAG-----GGUCUAGC-GG----GCUGCG- -5'
18505 3' -54.4 NC_004681.1 + 2158 0.69 0.697722
Target:  5'- gCGGCGUggugauGAUCCCAG--CGUCgCGGCGCa -3'
miRNA:   3'- -GUUGCG------UUAGGGUCuaGCGG-GCUGCG- -5'
18505 3' -54.4 NC_004681.1 + 3210 0.66 0.832537
Target:  5'- -cGCGCGAUCCgauCAGGUaguccugcgggacgUGCuuGGCGCc -3'
miRNA:   3'- guUGCGUUAGG---GUCUA--------------GCGggCUGCG- -5'
18505 3' -54.4 NC_004681.1 + 5560 0.67 0.798805
Target:  5'- cCGAUGCAcccGUCaCGGGUCGCCaucaaGCGCa -3'
miRNA:   3'- -GUUGCGU---UAGgGUCUAGCGGgc---UGCG- -5'
18505 3' -54.4 NC_004681.1 + 6112 0.71 0.558507
Target:  5'- cCAugGCGAUUCC-GAUUGCCCGcauccagucCGCg -3'
miRNA:   3'- -GUugCGUUAGGGuCUAGCGGGCu--------GCG- -5'
18505 3' -54.4 NC_004681.1 + 6256 0.66 0.826353
Target:  5'- --uUGCGGaCCCAGuacUGUCCGACGUa -3'
miRNA:   3'- guuGCGUUaGGGUCua-GCGGGCUGCG- -5'
18505 3' -54.4 NC_004681.1 + 11081 0.68 0.759788
Target:  5'- uGGCGUAGUcgCCCGGGUUcccacguaGCCCGACu- -3'
miRNA:   3'- gUUGCGUUA--GGGUCUAG--------CGGGCUGcg -5'
18505 3' -54.4 NC_004681.1 + 11097 0.68 0.759788
Target:  5'- aCGGCGCAaaacauAUgCCGGAauUCGCaCCGcguGCGCa -3'
miRNA:   3'- -GUUGCGU------UAgGGUCU--AGCG-GGC---UGCG- -5'
18505 3' -54.4 NC_004681.1 + 12088 0.66 0.852142
Target:  5'- -uACGUGG-CCgAGGUcCGCCCG-CGCg -3'
miRNA:   3'- guUGCGUUaGGgUCUA-GCGGGCuGCG- -5'
18505 3' -54.4 NC_004681.1 + 12266 0.71 0.579753
Target:  5'- uGugGCcgacUCCCgAGGUCGCCCcuGugGCa -3'
miRNA:   3'- gUugCGuu--AGGG-UCUAGCGGG--CugCG- -5'
18505 3' -54.4 NC_004681.1 + 12301 0.7 0.611911
Target:  5'- gGAUGCGGcgCgCGGGgaaGCCCGACGCc -3'
miRNA:   3'- gUUGCGUUa-GgGUCUag-CGGGCUGCG- -5'
18505 3' -54.4 NC_004681.1 + 13784 0.71 0.579753
Target:  5'- aCGGCGCc--CCCAagcuGUCGuCCCGGCGCu -3'
miRNA:   3'- -GUUGCGuuaGGGUc---UAGC-GGGCUGCG- -5'
18505 3' -54.4 NC_004681.1 + 14297 0.72 0.516748
Target:  5'- aGGCGCAGggugagCuUCAGGUCGCCgaGGCGCg -3'
miRNA:   3'- gUUGCGUUa-----G-GGUCUAGCGGg-CUGCG- -5'
18505 3' -54.4 NC_004681.1 + 17276 0.71 0.558507
Target:  5'- gCGGCGgGuAUCCCGGAgacgaCGCCCugcuGGCGCg -3'
miRNA:   3'- -GUUGCgU-UAGGGUCUa----GCGGG----CUGCG- -5'
18505 3' -54.4 NC_004681.1 + 17719 0.66 0.852142
Target:  5'- gCGACGUGAaCgCgGGGUCGUCCG-CGCc -3'
miRNA:   3'- -GUUGCGUUaG-GgUCUAGCGGGCuGCG- -5'
18505 3' -54.4 NC_004681.1 + 18189 0.71 0.547966
Target:  5'- ---gGCGGUCCUGGAgCGCcucCCGGCGCa -3'
miRNA:   3'- guugCGUUAGGGUCUaGCG---GGCUGCG- -5'
18505 3' -54.4 NC_004681.1 + 19088 0.68 0.739485
Target:  5'- cCGGCGuCAccaCCCAGGaCaCCCGGCGCg -3'
miRNA:   3'- -GUUGC-GUua-GGGUCUaGcGGGCUGCG- -5'
18505 3' -54.4 NC_004681.1 + 24004 0.66 0.826353
Target:  5'- cCAGC-CAacAUCCuCGGGUgGUUCGGCGCg -3'
miRNA:   3'- -GUUGcGU--UAGG-GUCUAgCGGGCUGCG- -5'
18505 3' -54.4 NC_004681.1 + 24128 0.68 0.759788
Target:  5'- uCAACGUGuUCCUcaAGAUCGCguCgGACGCc -3'
miRNA:   3'- -GUUGCGUuAGGG--UCUAGCG--GgCUGCG- -5'
18505 3' -54.4 NC_004681.1 + 24274 0.7 0.651754
Target:  5'- -uGCGCAcgccgaguagGUCCCAGgagaacaggcccuuGgcggCGUCCGACGCg -3'
miRNA:   3'- guUGCGU----------UAGGGUC--------------Ua---GCGGGCUGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.