miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18505 5' -59.5 NC_004681.1 + 42620 0.66 0.582895
Target:  5'- aAGuGGAugccGGGGGCGCauucCUGCCAGCgGUCg -3'
miRNA:   3'- -UC-CCU----CCUCCGCGa---GAUGGUUG-CGGa -5'
18505 5' -59.5 NC_004681.1 + 7135 0.66 0.566204
Target:  5'- cGGGAugcGGugauccugcaguccaAGGCGCUCgacACCcGCGCCc -3'
miRNA:   3'- uCCCU---CC---------------UCCGCGAGa--UGGuUGCGGa -5'
18505 5' -59.5 NC_004681.1 + 51193 0.66 0.551702
Target:  5'- cGGGAGGccgucgucuuGGGCGCUCUGgacuucucUCAG-GCCg -3'
miRNA:   3'- uCCCUCC----------UCCGCGAGAU--------GGUUgCGGa -5'
18505 5' -59.5 NC_004681.1 + 69219 0.66 0.531188
Target:  5'- gAGGGAGGccaGGGCGCgggCgaggCGGCGCUUc -3'
miRNA:   3'- -UCCCUCC---UCCGCGa--Gaug-GUUGCGGA- -5'
18505 5' -59.5 NC_004681.1 + 2973 0.66 0.531188
Target:  5'- cGGGAGGGGG-GCUUcgucacgguCgAGCGCCUc -3'
miRNA:   3'- uCCCUCCUCCgCGAGau-------GgUUGCGGA- -5'
18505 5' -59.5 NC_004681.1 + 18295 0.67 0.491053
Target:  5'- gGGGGugcgccGGGAGGCGCUCcaggACC---GCCa -3'
miRNA:   3'- -UCCC------UCCUCCGCGAGa---UGGuugCGGa -5'
18505 5' -59.5 NC_004681.1 + 34688 0.68 0.452382
Target:  5'- aGGuGGAGGAGGCGUaC-ACCGAgGCg- -3'
miRNA:   3'- -UC-CCUCCUCCGCGaGaUGGUUgCGga -5'
18505 5' -59.5 NC_004681.1 + 5439 0.69 0.363629
Target:  5'- ---cGGGAGGCGU---GCCAGCGCCUg -3'
miRNA:   3'- ucccUCCUCCGCGagaUGGUUGCGGA- -5'
18505 5' -59.5 NC_004681.1 + 6633 0.7 0.347384
Target:  5'- uGGGGGGuGGC-UUCUGCaugaGGCGCCg -3'
miRNA:   3'- uCCCUCCuCCGcGAGAUGg---UUGCGGa -5'
18505 5' -59.5 NC_004681.1 + 33661 0.71 0.309079
Target:  5'- cGGGAGuGAaGCGCUCgaagAgCGGCGCCa -3'
miRNA:   3'- uCCCUC-CUcCGCGAGa---UgGUUGCGGa -5'
18505 5' -59.5 NC_004681.1 + 37620 0.71 0.274748
Target:  5'- aAGGGugucaucgagaagucGGGGGUGCUCUgauGCCcGCGCCa -3'
miRNA:   3'- -UCCCu--------------CCUCCGCGAGA---UGGuUGCGGa -5'
18505 5' -59.5 NC_004681.1 + 15366 0.72 0.260996
Target:  5'- gAGGGua-AGGCGUUC-GCCGACGCCa -3'
miRNA:   3'- -UCCCuccUCCGCGAGaUGGUUGCGGa -5'
18505 5' -59.5 NC_004681.1 + 6395 0.72 0.254647
Target:  5'- gGGGGAGGAGGCc-----CCGGCGCCg -3'
miRNA:   3'- -UCCCUCCUCCGcgagauGGUUGCGGa -5'
18505 5' -59.5 NC_004681.1 + 11153 0.74 0.196436
Target:  5'- gAGGGAGGGGGUGCUaccacugucucggcCUAaccCCAACGCa- -3'
miRNA:   3'- -UCCCUCCUCCGCGA--------------GAU---GGUUGCGga -5'
18505 5' -59.5 NC_004681.1 + 57998 1.07 0.000796
Target:  5'- cAGGGAGGAGGCGCUCUACCAACGCCUc -3'
miRNA:   3'- -UCCCUCCUCCGCGAGAUGGUUGCGGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.