Results 1 - 15 of 15 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18505 | 5' | -59.5 | NC_004681.1 | + | 57998 | 1.07 | 0.000796 |
Target: 5'- cAGGGAGGAGGCGCUCUACCAACGCCUc -3' miRNA: 3'- -UCCCUCCUCCGCGAGAUGGUUGCGGA- -5' |
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18505 | 5' | -59.5 | NC_004681.1 | + | 11153 | 0.74 | 0.196436 |
Target: 5'- gAGGGAGGGGGUGCUaccacugucucggcCUAaccCCAACGCa- -3' miRNA: 3'- -UCCCUCCUCCGCGA--------------GAU---GGUUGCGga -5' |
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18505 | 5' | -59.5 | NC_004681.1 | + | 6395 | 0.72 | 0.254647 |
Target: 5'- gGGGGAGGAGGCc-----CCGGCGCCg -3' miRNA: 3'- -UCCCUCCUCCGcgagauGGUUGCGGa -5' |
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18505 | 5' | -59.5 | NC_004681.1 | + | 15366 | 0.72 | 0.260996 |
Target: 5'- gAGGGua-AGGCGUUC-GCCGACGCCa -3' miRNA: 3'- -UCCCuccUCCGCGAGaUGGUUGCGGa -5' |
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18505 | 5' | -59.5 | NC_004681.1 | + | 7135 | 0.66 | 0.566204 |
Target: 5'- cGGGAugcGGugauccugcaguccaAGGCGCUCgacACCcGCGCCc -3' miRNA: 3'- uCCCU---CC---------------UCCGCGAGa--UGGuUGCGGa -5' |
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18505 | 5' | -59.5 | NC_004681.1 | + | 51193 | 0.66 | 0.551702 |
Target: 5'- cGGGAGGccgucgucuuGGGCGCUCUGgacuucucUCAG-GCCg -3' miRNA: 3'- uCCCUCC----------UCCGCGAGAU--------GGUUgCGGa -5' |
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18505 | 5' | -59.5 | NC_004681.1 | + | 69219 | 0.66 | 0.531188 |
Target: 5'- gAGGGAGGccaGGGCGCgggCgaggCGGCGCUUc -3' miRNA: 3'- -UCCCUCC---UCCGCGa--Gaug-GUUGCGGA- -5' |
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18505 | 5' | -59.5 | NC_004681.1 | + | 2973 | 0.66 | 0.531188 |
Target: 5'- cGGGAGGGGG-GCUUcgucacgguCgAGCGCCUc -3' miRNA: 3'- uCCCUCCUCCgCGAGau-------GgUUGCGGA- -5' |
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18505 | 5' | -59.5 | NC_004681.1 | + | 18295 | 0.67 | 0.491053 |
Target: 5'- gGGGGugcgccGGGAGGCGCUCcaggACC---GCCa -3' miRNA: 3'- -UCCC------UCCUCCGCGAGa---UGGuugCGGa -5' |
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18505 | 5' | -59.5 | NC_004681.1 | + | 34688 | 0.68 | 0.452382 |
Target: 5'- aGGuGGAGGAGGCGUaC-ACCGAgGCg- -3' miRNA: 3'- -UC-CCUCCUCCGCGaGaUGGUUgCGga -5' |
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18505 | 5' | -59.5 | NC_004681.1 | + | 5439 | 0.69 | 0.363629 |
Target: 5'- ---cGGGAGGCGU---GCCAGCGCCUg -3' miRNA: 3'- ucccUCCUCCGCGagaUGGUUGCGGA- -5' |
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18505 | 5' | -59.5 | NC_004681.1 | + | 6633 | 0.7 | 0.347384 |
Target: 5'- uGGGGGGuGGC-UUCUGCaugaGGCGCCg -3' miRNA: 3'- uCCCUCCuCCGcGAGAUGg---UUGCGGa -5' |
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18505 | 5' | -59.5 | NC_004681.1 | + | 33661 | 0.71 | 0.309079 |
Target: 5'- cGGGAGuGAaGCGCUCgaagAgCGGCGCCa -3' miRNA: 3'- uCCCUC-CUcCGCGAGa---UgGUUGCGGa -5' |
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18505 | 5' | -59.5 | NC_004681.1 | + | 37620 | 0.71 | 0.274748 |
Target: 5'- aAGGGugucaucgagaagucGGGGGUGCUCUgauGCCcGCGCCa -3' miRNA: 3'- -UCCCu--------------CCUCCGCGAGA---UGGuUGCGGa -5' |
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18505 | 5' | -59.5 | NC_004681.1 | + | 42620 | 0.66 | 0.582895 |
Target: 5'- aAGuGGAugccGGGGGCGCauucCUGCCAGCgGUCg -3' miRNA: 3'- -UC-CCU----CCUCCGCGa---GAUGGUUG-CGGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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