miRNA display CGI


Results 1 - 20 of 109 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18506 3' -63.2 NC_004681.1 + 35396 0.66 0.430574
Target:  5'- uGGCCGGauuCCucGACgGGCaCCCACu -3'
miRNA:   3'- gCCGGCUgc-GGuuCUGgCCGcGGGUG- -5'
18506 3' -63.2 NC_004681.1 + 15940 0.66 0.430574
Target:  5'- aGaGCCuuCGUCAGGGuCUGGUGCUCACc -3'
miRNA:   3'- gC-CGGcuGCGGUUCU-GGCCGCGGGUG- -5'
18506 3' -63.2 NC_004681.1 + 50323 0.66 0.430574
Target:  5'- -aGCCGaggGCGCCAuuGGAgCUGGCGaCCACc -3'
miRNA:   3'- gcCGGC---UGCGGU--UCU-GGCCGCgGGUG- -5'
18506 3' -63.2 NC_004681.1 + 25301 0.66 0.430574
Target:  5'- gCGGUCGcCGCCGuuGCCaGCGCCg-- -3'
miRNA:   3'- -GCCGGCuGCGGUucUGGcCGCGGgug -5'
18506 3' -63.2 NC_004681.1 + 42518 0.66 0.430574
Target:  5'- aGGCUGcGCGCCGacgAGACgGGgGCgCCGu -3'
miRNA:   3'- gCCGGC-UGCGGU---UCUGgCCgCG-GGUg -5'
18506 3' -63.2 NC_004681.1 + 2955 0.66 0.429685
Target:  5'- aCGGUCGAgCGCCucggGGACggugaccguguagCGGCGgucCCCGCg -3'
miRNA:   3'- -GCCGGCU-GCGGu---UCUG-------------GCCGC---GGGUG- -5'
18506 3' -63.2 NC_004681.1 + 16179 0.66 0.421737
Target:  5'- gCGGUggUGACGCCAccgAGGgCGGCaGUCUGCg -3'
miRNA:   3'- -GCCG--GCUGCGGU---UCUgGCCG-CGGGUG- -5'
18506 3' -63.2 NC_004681.1 + 18364 0.66 0.421737
Target:  5'- cCGG-UGGCGCCAucgacauggcAGGCCaggcGGCGgCCGCg -3'
miRNA:   3'- -GCCgGCUGCGGU----------UCUGG----CCGCgGGUG- -5'
18506 3' -63.2 NC_004681.1 + 40386 0.66 0.421737
Target:  5'- gCGGCac-CGCCAGcguGGCCGGUGUcuCCACc -3'
miRNA:   3'- -GCCGgcuGCGGUU---CUGGCCGCG--GGUG- -5'
18506 3' -63.2 NC_004681.1 + 32414 0.66 0.421737
Target:  5'- uGGCgGaccuugacgaaGCGCCAAGGCUGGgGgUCGCc -3'
miRNA:   3'- gCCGgC-----------UGCGGUUCUGGCCgCgGGUG- -5'
18506 3' -63.2 NC_004681.1 + 47238 0.66 0.413012
Target:  5'- -cGCCGACaaUGAGACCauccGCGCCUACa -3'
miRNA:   3'- gcCGGCUGcgGUUCUGGc---CGCGGGUG- -5'
18506 3' -63.2 NC_004681.1 + 61121 0.66 0.413012
Target:  5'- aGGCCGuCGCCAAcuucACCGucGUGUCCAa -3'
miRNA:   3'- gCCGGCuGCGGUUc---UGGC--CGCGGGUg -5'
18506 3' -63.2 NC_004681.1 + 67697 0.66 0.413012
Target:  5'- uCGGCacCGACGaCAAGggccGCUGGCGCuaCCGCa -3'
miRNA:   3'- -GCCG--GCUGCgGUUC----UGGCCGCG--GGUG- -5'
18506 3' -63.2 NC_004681.1 + 29158 0.66 0.413012
Target:  5'- aCGGCC-ACGUCAAcGACCaaccccugGGCGgCCAUc -3'
miRNA:   3'- -GCCGGcUGCGGUU-CUGG--------CCGCgGGUG- -5'
18506 3' -63.2 NC_004681.1 + 426 0.66 0.412145
Target:  5'- cCGGUgGACGaCgAGGGCCuccgcugGGCGUCCAa -3'
miRNA:   3'- -GCCGgCUGC-GgUUCUGG-------CCGCGGGUg -5'
18506 3' -63.2 NC_004681.1 + 16578 0.66 0.412145
Target:  5'- gGGCgCGGCGCCGaguaguccgugggGGGCUGGaaCGCcaCCACg -3'
miRNA:   3'- gCCG-GCUGCGGU-------------UCUGGCC--GCG--GGUG- -5'
18506 3' -63.2 NC_004681.1 + 11840 0.66 0.404398
Target:  5'- aCGGaCGACaCCAAGAUuuggcagucgCGGCGCgCGCa -3'
miRNA:   3'- -GCCgGCUGcGGUUCUG----------GCCGCGgGUG- -5'
18506 3' -63.2 NC_004681.1 + 65967 0.66 0.404398
Target:  5'- aCGGCaCGAagGCCGAGAa-GGCuGCCgCGCa -3'
miRNA:   3'- -GCCG-GCUg-CGGUUCUggCCG-CGG-GUG- -5'
18506 3' -63.2 NC_004681.1 + 7826 0.66 0.404398
Target:  5'- aGGCCGgaACGCCAcaAGAuucaaCCGaagaauCGCCCGCu -3'
miRNA:   3'- gCCGGC--UGCGGU--UCU-----GGCc-----GCGGGUG- -5'
18506 3' -63.2 NC_004681.1 + 25021 0.66 0.404398
Target:  5'- -aGUCGACGCCGcgcagaAGGgUGGCagcuGCCCACu -3'
miRNA:   3'- gcCGGCUGCGGU------UCUgGCCG----CGGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.