miRNA display CGI


Results 41 - 60 of 109 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18506 3' -63.2 NC_004681.1 + 9603 0.67 0.363076
Target:  5'- aGGCCGAgGCgCucu-UCGGCGCgCACg -3'
miRNA:   3'- gCCGGCUgCG-GuucuGGCCGCGgGUG- -5'
18506 3' -63.2 NC_004681.1 + 30645 0.67 0.379249
Target:  5'- uCGGUgGugGCaccuucGGACUGGCGuCCCGg -3'
miRNA:   3'- -GCCGgCugCGgu----UCUGGCCGC-GGGUg -5'
18506 3' -63.2 NC_004681.1 + 65029 0.67 0.371102
Target:  5'- aGGCgCGuCGCCAccucgugcuccAGGCgGGCGCCgCGg -3'
miRNA:   3'- gCCG-GCuGCGGU-----------UCUGgCCGCGG-GUg -5'
18506 3' -63.2 NC_004681.1 + 64591 0.67 0.355171
Target:  5'- aGGugaCCGGCGaCCAggaauGGACCGGCGaaCGCa -3'
miRNA:   3'- gCC---GGCUGC-GGU-----UCUGGCCGCggGUG- -5'
18506 3' -63.2 NC_004681.1 + 40062 0.67 0.337453
Target:  5'- aGGCCGACGCCAgcacccagaucgacAGGCUGGagaUCAUg -3'
miRNA:   3'- gCCGGCUGCGGU--------------UCUGGCCgcgGGUG- -5'
18506 3' -63.2 NC_004681.1 + 30260 0.67 0.338968
Target:  5'- gCGGCCGguacgGCGUCGAGACCaccgauccguGGUGaccugaaCCCACa -3'
miRNA:   3'- -GCCGGC-----UGCGGUUCUGG----------CCGC-------GGGUG- -5'
18506 3' -63.2 NC_004681.1 + 6403 0.67 0.339727
Target:  5'- aGGCCccGGCGCCGAagcGACCGGC-CagCACu -3'
miRNA:   3'- gCCGG--CUGCGGUU---CUGGCCGcGg-GUG- -5'
18506 3' -63.2 NC_004681.1 + 44158 0.67 0.339727
Target:  5'- cCGGCCG-CGaauaCGAGugCuacGGCGCCC-Ca -3'
miRNA:   3'- -GCCGGCuGCg---GUUCugG---CCGCGGGuG- -5'
18506 3' -63.2 NC_004681.1 + 66741 0.67 0.347388
Target:  5'- uGGCCaauGCGCagAAGGCCGGUggcaacgccGCCUACa -3'
miRNA:   3'- gCCGGc--UGCGg-UUCUGGCCG---------CGGGUG- -5'
18506 3' -63.2 NC_004681.1 + 40152 0.67 0.355171
Target:  5'- aGGCCgcGACGCCGcAGAUCgaGGCGaugagauagaCCCGCg -3'
miRNA:   3'- gCCGG--CUGCGGU-UCUGG--CCGC----------GGGUG- -5'
18506 3' -63.2 NC_004681.1 + 10266 0.68 0.31032
Target:  5'- aGGCCGGuCGUgucgaagaUGAGGCCGGUGUCgCGCu -3'
miRNA:   3'- gCCGGCU-GCG--------GUUCUGGCCGCGG-GUG- -5'
18506 3' -63.2 NC_004681.1 + 40459 0.68 0.289563
Target:  5'- gCGGCCGAugacauugaaCGCCGcGGCCGaCGCcgCCACg -3'
miRNA:   3'- -GCCGGCU----------GCGGUuCUGGCcGCG--GGUG- -5'
18506 3' -63.2 NC_004681.1 + 8911 0.68 0.289563
Target:  5'- uGGCUGGCGgCGGGuaccCCGGCGUCaACg -3'
miRNA:   3'- gCCGGCUGCgGUUCu---GGCCGCGGgUG- -5'
18506 3' -63.2 NC_004681.1 + 55995 0.68 0.33219
Target:  5'- aGGCCcucacgcagcgcGACGCCAAGGagGGCGaccuCCGCa -3'
miRNA:   3'- gCCGG------------CUGCGGUUCUggCCGCg---GGUG- -5'
18506 3' -63.2 NC_004681.1 + 63538 0.68 0.33219
Target:  5'- cCGGCCGAgGCUggAAGcCUGGUGgCCAg -3'
miRNA:   3'- -GCCGGCUgCGG--UUCuGGCCGCgGGUg -5'
18506 3' -63.2 NC_004681.1 + 17824 0.68 0.303278
Target:  5'- gCGGCCG-CGCaAGGcACCGGC-CUCACc -3'
miRNA:   3'- -GCCGGCuGCGgUUC-UGGCCGcGGGUG- -5'
18506 3' -63.2 NC_004681.1 + 15380 0.68 0.31032
Target:  5'- -cGCCGACGCCAuccAGAaCGGCacccuGUCCGCc -3'
miRNA:   3'- gcCGGCUGCGGU---UCUgGCCG-----CGGGUG- -5'
18506 3' -63.2 NC_004681.1 + 50079 0.68 0.317486
Target:  5'- gGGUCGACGuCCAGGACUacaaGGaCGgCUACa -3'
miRNA:   3'- gCCGGCUGC-GGUUCUGG----CC-GCgGGUG- -5'
18506 3' -63.2 NC_004681.1 + 32136 0.68 0.317486
Target:  5'- gCGGCCcACGCCAAcGACCaGCuggaCCGCg -3'
miRNA:   3'- -GCCGGcUGCGGUU-CUGGcCGcg--GGUG- -5'
18506 3' -63.2 NC_004681.1 + 30166 0.68 0.33219
Target:  5'- gCGGCCGcggaguggaccuACGCCAAGAacccugaCGGCaCCgACa -3'
miRNA:   3'- -GCCGGC------------UGCGGUUCUg------GCCGcGGgUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.