Results 101 - 109 of 109 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio #
|
P value |
| Predicted miRNA align pattern | |||||||
| 18506 | 3' | -63.2 | NC_004681.1 | + | 54860 | 0.73 | 0.145177 |
|
Target: 5'- cCGGCUGACGCCAAGGacgaccgCGGCaacagcuGCCCGa -3' miRNA: 3'- -GCCGGCUGCGGUUCUg------GCCG-------CGGGUg -5' |
|||||||
| 18506 | 3' | -63.2 | NC_004681.1 | + | 7498 | 0.74 | 0.112378 |
|
Target: 5'- cCGGUCGAUGCCuGGGCCugGGUGCgCGCg -3' miRNA: 3'- -GCCGGCUGCGGuUCUGG--CCGCGgGUG- -5' |
|||||||
| 18506 | 3' | -63.2 | NC_004681.1 | + | 68889 | 0.74 | 0.118391 |
|
Target: 5'- gCGGCCGACGCCAucga-GGCGCUgACc -3' miRNA: 3'- -GCCGGCUGCGGUucuggCCGCGGgUG- -5' |
|||||||
| 18506 | 3' | -63.2 | NC_004681.1 | + | 46731 | 0.74 | 0.126984 |
|
Target: 5'- gCGGCauCGACGCUgucaugaacgugguGGGACCGGCGCUgCGCg -3' miRNA: 3'- -GCCG--GCUGCGG--------------UUCUGGCCGCGG-GUG- -5' |
|||||||
| 18506 | 3' | -63.2 | NC_004681.1 | + | 14778 | 0.75 | 0.10948 |
|
Target: 5'- -cGCgGACGCCcuggccauccugAAGGCUGGCGCCCAg -3' miRNA: 3'- gcCGgCUGCGG------------UUCUGGCCGCGGGUg -5' |
|||||||
| 18506 | 3' | -63.2 | NC_004681.1 | + | 7264 | 0.75 | 0.096013 |
|
Target: 5'- gCGGCCGuccaccucgGCGCCGAGugCGcCGCCUGCg -3' miRNA: 3'- -GCCGGC---------UGCGGUUCugGCcGCGGGUG- -5' |
|||||||
| 18506 | 3' | -63.2 | NC_004681.1 | + | 994 | 0.75 | 0.106652 |
|
Target: 5'- aGGCgGACGCCAGGG-CGGCuuCCCGCu -3' miRNA: 3'- gCCGgCUGCGGUUCUgGCCGc-GGGUG- -5' |
|||||||
| 18506 | 3' | -63.2 | NC_004681.1 | + | 50974 | 0.78 | 0.059441 |
|
Target: 5'- -cGCCGACGCCAAGcgucaauggaacACCGGCGUCgACg -3' miRNA: 3'- gcCGGCUGCGGUUC------------UGGCCGCGGgUG- -5' |
|||||||
| 18506 | 3' | -63.2 | NC_004681.1 | + | 58432 | 1.09 | 0.000283 |
|
Target: 5'- gCGGCCGACGCCAAGACCGGCGCCCACg -3' miRNA: 3'- -GCCGGCUGCGGUUCUGGCCGCGGGUG- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home