miRNA display CGI


Results 1 - 20 of 109 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18506 3' -63.2 NC_004681.1 + 58432 1.09 0.000283
Target:  5'- gCGGCCGACGCCAAGACCGGCGCCCACg -3'
miRNA:   3'- -GCCGGCUGCGGUUCUGGCCGCGGGUG- -5'
18506 3' -63.2 NC_004681.1 + 50974 0.78 0.059441
Target:  5'- -cGCCGACGCCAAGcgucaauggaacACCGGCGUCgACg -3'
miRNA:   3'- gcCGGCUGCGGUUC------------UGGCCGCGGgUG- -5'
18506 3' -63.2 NC_004681.1 + 994 0.75 0.106652
Target:  5'- aGGCgGACGCCAGGG-CGGCuuCCCGCu -3'
miRNA:   3'- gCCGgCUGCGGUUCUgGCCGc-GGGUG- -5'
18506 3' -63.2 NC_004681.1 + 14778 0.75 0.10948
Target:  5'- -cGCgGACGCCcuggccauccugAAGGCUGGCGCCCAg -3'
miRNA:   3'- gcCGgCUGCGG------------UUCUGGCCGCGGGUg -5'
18506 3' -63.2 NC_004681.1 + 7264 0.75 0.096013
Target:  5'- gCGGCCGuccaccucgGCGCCGAGugCGcCGCCUGCg -3'
miRNA:   3'- -GCCGGC---------UGCGGUUCugGCcGCGGGUG- -5'
18506 3' -63.2 NC_004681.1 + 7498 0.74 0.112378
Target:  5'- cCGGUCGAUGCCuGGGCCugGGUGCgCGCg -3'
miRNA:   3'- -GCCGGCUGCGGuUCUGG--CCGCGgGUG- -5'
18506 3' -63.2 NC_004681.1 + 68889 0.74 0.118391
Target:  5'- gCGGCCGACGCCAucga-GGCGCUgACc -3'
miRNA:   3'- -GCCGGCUGCGGUucuggCCGCGGgUG- -5'
18506 3' -63.2 NC_004681.1 + 46731 0.74 0.126984
Target:  5'- gCGGCauCGACGCUgucaugaacgugguGGGACCGGCGCUgCGCg -3'
miRNA:   3'- -GCCG--GCUGCGG--------------UUCUGGCCGCGG-GUG- -5'
18506 3' -63.2 NC_004681.1 + 45696 0.73 0.139698
Target:  5'- uGGCCGACGCgGAGgaggcACCGGCcaccuugcgggcgauGUCCACc -3'
miRNA:   3'- gCCGGCUGCGgUUC-----UGGCCG---------------CGGGUG- -5'
18506 3' -63.2 NC_004681.1 + 40076 0.73 0.14555
Target:  5'- aGGCCGA-GCCGGugaguuGAcCCGGCGCCgACg -3'
miRNA:   3'- gCCGGCUgCGGUU------CU-GGCCGCGGgUG- -5'
18506 3' -63.2 NC_004681.1 + 45097 0.73 0.14932
Target:  5'- gCGGUCu-CGCuCAAGACCGGgGCCgACg -3'
miRNA:   3'- -GCCGGcuGCG-GUUCUGGCCgCGGgUG- -5'
18506 3' -63.2 NC_004681.1 + 54860 0.73 0.145177
Target:  5'- cCGGCUGACGCCAAGGacgaccgCGGCaacagcuGCCCGa -3'
miRNA:   3'- -GCCGGCUGCGGUUCUg------GCCG-------CGGGUg -5'
18506 3' -63.2 NC_004681.1 + 53617 0.73 0.138269
Target:  5'- aGGCCcagacgGAgGCCAAGAacgaCGGCGCCCu- -3'
miRNA:   3'- gCCGG------CUgCGGUUCUg---GCCGCGGGug -5'
18506 3' -63.2 NC_004681.1 + 22396 0.72 0.165303
Target:  5'- gGGCUcacccuGCGCCAugacGGGCagGGCGCCCACg -3'
miRNA:   3'- gCCGGc-----UGCGGU----UCUGg-CCGCGGGUG- -5'
18506 3' -63.2 NC_004681.1 + 24925 0.72 0.173421
Target:  5'- -cGCCGACGCCGAugaggucGACCGcGUugGCCCAUg -3'
miRNA:   3'- gcCGGCUGCGGUU-------CUGGC-CG--CGGGUG- -5'
18506 3' -63.2 NC_004681.1 + 18202 0.72 0.169532
Target:  5'- uGGCCGgggGCGCCGAuGCCGGggaugccgaUGCCCAUa -3'
miRNA:   3'- gCCGGC---UGCGGUUcUGGCC---------GCGGGUG- -5'
18506 3' -63.2 NC_004681.1 + 24191 0.71 0.192158
Target:  5'- aGGCUGGCGCCGGaACCuuGCugGCCCACg -3'
miRNA:   3'- gCCGGCUGCGGUUcUGGc-CG--CGGGUG- -5'
18506 3' -63.2 NC_004681.1 + 14896 0.71 0.201927
Target:  5'- gGGCCagcugGGCGCCAGccuucaggauGGCCagGGCGUCCGCg -3'
miRNA:   3'- gCCGG-----CUGCGGUU----------CUGG--CCGCGGGUG- -5'
18506 3' -63.2 NC_004681.1 + 10654 0.71 0.206972
Target:  5'- -uGCCuGGCGCCc---CCGGUGCCCGCg -3'
miRNA:   3'- gcCGG-CUGCGGuucuGGCCGCGGGUG- -5'
18506 3' -63.2 NC_004681.1 + 8239 0.71 0.18743
Target:  5'- aGGCCGAgGUCGAGGCgcaCGaGCGCgCGCa -3'
miRNA:   3'- gCCGGCUgCGGUUCUG---GC-CGCGgGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.