Results 21 - 40 of 109 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18506 | 3' | -63.2 | NC_004681.1 | + | 8239 | 0.71 | 0.18743 |
Target: 5'- aGGCCGAgGUCGAGGCgcaCGaGCGCgCGCa -3' miRNA: 3'- gCCGGCUgCGGUUCUG---GC-CGCGgGUG- -5' |
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18506 | 3' | -63.2 | NC_004681.1 | + | 25779 | 0.7 | 0.217388 |
Target: 5'- aGGCCGACGCCu-GGCCc-CGCCCc- -3' miRNA: 3'- gCCGGCUGCGGuuCUGGccGCGGGug -5' |
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18506 | 3' | -63.2 | NC_004681.1 | + | 17943 | 0.7 | 0.245399 |
Target: 5'- -cGCCGggGCGCCcggguugguGAGGCCGGUGCCUugcGCg -3' miRNA: 3'- gcCGGC--UGCGG---------UUCUGGCCGCGGG---UG- -5' |
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18506 | 3' | -63.2 | NC_004681.1 | + | 58738 | 0.7 | 0.239567 |
Target: 5'- gCGGCCGugGCgCAGGACaccuugaGGgGCCgAg -3' miRNA: 3'- -GCCGGCugCG-GUUCUGg------CCgCGGgUg -5' |
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18506 | 3' | -63.2 | NC_004681.1 | + | 65888 | 0.7 | 0.217388 |
Target: 5'- gCGGCCGAgGCCGAGA-CGGaCGaacuCCGCc -3' miRNA: 3'- -GCCGGCUgCGGUUCUgGCC-GCg---GGUG- -5' |
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18506 | 3' | -63.2 | NC_004681.1 | + | 61741 | 0.7 | 0.22222 |
Target: 5'- aGGCCGcccucgcGCGCCAccAGACCG-CGgCCGCc -3' miRNA: 3'- gCCGGC-------UGCGGU--UCUGGCcGCgGGUG- -5' |
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18506 | 3' | -63.2 | NC_004681.1 | + | 9088 | 0.7 | 0.222763 |
Target: 5'- uGGCCG-CGUCGucACCGGCGCCg-- -3' miRNA: 3'- gCCGGCuGCGGUucUGGCCGCGGgug -5' |
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18506 | 3' | -63.2 | NC_004681.1 | + | 14400 | 0.7 | 0.222763 |
Target: 5'- -cGCCGACGCCAAGcGCaagcaGGCGgCCGa -3' miRNA: 3'- gcCGGCUGCGGUUC-UGg----CCGCgGGUg -5' |
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18506 | 3' | -63.2 | NC_004681.1 | + | 17288 | 0.7 | 0.233851 |
Target: 5'- cCGGagaCGACGCCcugcuGGCgCGcGUGCCCGCg -3' miRNA: 3'- -GCCg--GCUGCGGuu---CUG-GC-CGCGGGUG- -5' |
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18506 | 3' | -63.2 | NC_004681.1 | + | 51874 | 0.7 | 0.245399 |
Target: 5'- gCGGCCuuggagauGAUGUUcAGACCGGCguuacucuuGCCCGCg -3' miRNA: 3'- -GCCGG--------CUGCGGuUCUGGCCG---------CGGGUG- -5' |
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18506 | 3' | -63.2 | NC_004681.1 | + | 58984 | 0.69 | 0.257417 |
Target: 5'- aGGCCGcccaggUGCUcgAAGACCucgugggggagGGCGCCCACc -3' miRNA: 3'- gCCGGCu-----GCGG--UUCUGG-----------CCGCGGGUG- -5' |
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18506 | 3' | -63.2 | NC_004681.1 | + | 7213 | 0.69 | 0.269912 |
Target: 5'- gCGGCCGGUGCCGGuaaCGGCGacaCCGCg -3' miRNA: 3'- -GCCGGCUGCGGUUcugGCCGCg--GGUG- -5' |
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18506 | 3' | -63.2 | NC_004681.1 | + | 2294 | 0.69 | 0.269912 |
Target: 5'- gCGGCuacacccuCGAUGacaucgaaugcaCCGAGGUCGGCGCCCACu -3' miRNA: 3'- -GCCG--------GCUGC------------GGUUCUGGCCGCGGGUG- -5' |
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18506 | 3' | -63.2 | NC_004681.1 | + | 56209 | 0.69 | 0.27634 |
Target: 5'- uGaGUCgGugGCCuGGACCGGCGUCgACc -3' miRNA: 3'- gC-CGG-CugCGGuUCUGGCCGCGGgUG- -5' |
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18506 | 3' | -63.2 | NC_004681.1 | + | 38799 | 0.69 | 0.282891 |
Target: 5'- gGGCCGcgcgcaagucCGCCGAGACCauccGgGCCUACg -3' miRNA: 3'- gCCGGCu---------GCGGUUCUGGc---CgCGGGUG- -5' |
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18506 | 3' | -63.2 | NC_004681.1 | + | 6483 | 0.69 | 0.270549 |
Target: 5'- gGGCCuccucccccucgacaGCGCCAucGGGCgUGGCGCCCAa -3' miRNA: 3'- gCCGGc--------------UGCGGU--UCUG-GCCGCGGGUg -5' |
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18506 | 3' | -63.2 | NC_004681.1 | + | 44483 | 0.69 | 0.269912 |
Target: 5'- aGGgUGAguUGCCcGGACgGGCGCCCGu -3' miRNA: 3'- gCCgGCU--GCGGuUCUGgCCGCGGGUg -5' |
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18506 | 3' | -63.2 | NC_004681.1 | + | 12094 | 0.69 | 0.263604 |
Target: 5'- uCGGCUugGugGCCuuguAGccAgCGGUGCCCACg -3' miRNA: 3'- -GCCGG--CugCGGu---UC--UgGCCGCGGGUG- -5' |
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18506 | 3' | -63.2 | NC_004681.1 | + | 65130 | 0.69 | 0.282891 |
Target: 5'- aCGGCCGccacaacuaccGCGUCu---CCGGUGUCCGCg -3' miRNA: 3'- -GCCGGC-----------UGCGGuucuGGCCGCGGGUG- -5' |
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18506 | 3' | -63.2 | NC_004681.1 | + | 18737 | 0.69 | 0.282891 |
Target: 5'- gGGCgaCGGCGgCGAGGCCGcGCGUgacaCCGCa -3' miRNA: 3'- gCCG--GCUGCgGUUCUGGC-CGCG----GGUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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