Results 41 - 60 of 109 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18506 | 3' | -63.2 | NC_004681.1 | + | 18737 | 0.69 | 0.282891 |
Target: 5'- gGGCgaCGGCGgCGAGGCCGcGCGUgacaCCGCa -3' miRNA: 3'- gCCG--GCUGCgGUUCUGGC-CGCG----GGUG- -5' |
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18506 | 3' | -63.2 | NC_004681.1 | + | 65130 | 0.69 | 0.282891 |
Target: 5'- aCGGCCGccacaacuaccGCGUCu---CCGGUGUCCGCg -3' miRNA: 3'- -GCCGGC-----------UGCGGuucuGGCCGCGGGUG- -5' |
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18506 | 3' | -63.2 | NC_004681.1 | + | 58984 | 0.69 | 0.257417 |
Target: 5'- aGGCCGcccaggUGCUcgAAGACCucgugggggagGGCGCCCACc -3' miRNA: 3'- gCCGGCu-----GCGG--UUCUGG-----------CCGCGGGUG- -5' |
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18506 | 3' | -63.2 | NC_004681.1 | + | 16496 | 0.69 | 0.272469 |
Target: 5'- uGGCCuggucacccuuggagGugGCCGAGGCaacccacuUGGCGCCCuCg -3' miRNA: 3'- gCCGG---------------CugCGGUUCUG--------GCCGCGGGuG- -5' |
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18506 | 3' | -63.2 | NC_004681.1 | + | 63538 | 0.68 | 0.33219 |
Target: 5'- cCGGCCGAgGCUggAAGcCUGGUGgCCAg -3' miRNA: 3'- -GCCGGCUgCGG--UUCuGGCCGCgGGUg -5' |
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18506 | 3' | -63.2 | NC_004681.1 | + | 39633 | 0.68 | 0.289563 |
Target: 5'- gCGGUCGAucugaCGCCGGGAUUGccaGCCCGCu -3' miRNA: 3'- -GCCGGCU-----GCGGUUCUGGCcg-CGGGUG- -5' |
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18506 | 3' | -63.2 | NC_004681.1 | + | 16633 | 0.68 | 0.303278 |
Target: 5'- aCGGCCGcCGUgGGGACCGuuGCCgcCACc -3' miRNA: 3'- -GCCGGCuGCGgUUCUGGCcgCGG--GUG- -5' |
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18506 | 3' | -63.2 | NC_004681.1 | + | 32116 | 0.68 | 0.296359 |
Target: 5'- cCGGCCG-UGCCGAcACCcgcGGCGCCgAUc -3' miRNA: 3'- -GCCGGCuGCGGUUcUGG---CCGCGGgUG- -5' |
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18506 | 3' | -63.2 | NC_004681.1 | + | 10266 | 0.68 | 0.31032 |
Target: 5'- aGGCCGGuCGUgucgaagaUGAGGCCGGUGUCgCGCu -3' miRNA: 3'- gCCGGCU-GCG--------GUUCUGGCCGCGG-GUG- -5' |
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18506 | 3' | -63.2 | NC_004681.1 | + | 55995 | 0.68 | 0.33219 |
Target: 5'- aGGCCcucacgcagcgcGACGCCAAGGagGGCGaccuCCGCa -3' miRNA: 3'- gCCGG------------CUGCGGUUCUggCCGCg---GGUG- -5' |
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18506 | 3' | -63.2 | NC_004681.1 | + | 8911 | 0.68 | 0.289563 |
Target: 5'- uGGCUGGCGgCGGGuaccCCGGCGUCaACg -3' miRNA: 3'- gCCGGCUGCgGUUCu---GGCCGCGGgUG- -5' |
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18506 | 3' | -63.2 | NC_004681.1 | + | 40459 | 0.68 | 0.289563 |
Target: 5'- gCGGCCGAugacauugaaCGCCGcGGCCGaCGCcgCCACg -3' miRNA: 3'- -GCCGGCU----------GCGGUuCUGGCcGCG--GGUG- -5' |
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18506 | 3' | -63.2 | NC_004681.1 | + | 17824 | 0.68 | 0.303278 |
Target: 5'- gCGGCCG-CGCaAGGcACCGGC-CUCACc -3' miRNA: 3'- -GCCGGCuGCGgUUC-UGGCCGcGGGUG- -5' |
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18506 | 3' | -63.2 | NC_004681.1 | + | 15380 | 0.68 | 0.31032 |
Target: 5'- -cGCCGACGCCAuccAGAaCGGCacccuGUCCGCc -3' miRNA: 3'- gcCGGCUGCGGU---UCUgGCCG-----CGGGUG- -5' |
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18506 | 3' | -63.2 | NC_004681.1 | + | 24053 | 0.68 | 0.320387 |
Target: 5'- aGGUCGGCGaacguguuggcacgcCCGAu-CCGGCGCCgCGCa -3' miRNA: 3'- gCCGGCUGC---------------GGUUcuGGCCGCGG-GUG- -5' |
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18506 | 3' | -63.2 | NC_004681.1 | + | 32136 | 0.68 | 0.317486 |
Target: 5'- gCGGCCcACGCCAAcGACCaGCuggaCCGCg -3' miRNA: 3'- -GCCGGcUGCGGUU-CUGGcCGcg--GGUG- -5' |
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18506 | 3' | -63.2 | NC_004681.1 | + | 30166 | 0.68 | 0.33219 |
Target: 5'- gCGGCCGcggaguggaccuACGCCAAGAacccugaCGGCaCCgACa -3' miRNA: 3'- -GCCGGC------------UGCGGUUCUg------GCCGcGGgUG- -5' |
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18506 | 3' | -63.2 | NC_004681.1 | + | 70933 | 0.68 | 0.331443 |
Target: 5'- gCGGCCGcugaGCGUgGAGACCgugacacGGUGCgCGCu -3' miRNA: 3'- -GCCGGC----UGCGgUUCUGG-------CCGCGgGUG- -5' |
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18506 | 3' | -63.2 | NC_004681.1 | + | 50079 | 0.68 | 0.317486 |
Target: 5'- gGGUCGACGuCCAGGACUacaaGGaCGgCUACa -3' miRNA: 3'- gCCGGCUGC-GGUUCUGG----CC-GCgGGUG- -5' |
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18506 | 3' | -63.2 | NC_004681.1 | + | 31241 | 0.67 | 0.355171 |
Target: 5'- gGGaCCGGCGCCGAGugUuuGGCuaCgGCa -3' miRNA: 3'- gCC-GGCUGCGGUUCugG--CCGcgGgUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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