Results 81 - 100 of 109 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18506 | 3' | -63.2 | NC_004681.1 | + | 30260 | 0.67 | 0.338968 |
Target: 5'- gCGGCCGguacgGCGUCGAGACCaccgauccguGGUGaccugaaCCCACa -3' miRNA: 3'- -GCCGGC-----UGCGGUUCUGG----------CCGC-------GGGUG- -5' |
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18506 | 3' | -63.2 | NC_004681.1 | + | 40062 | 0.67 | 0.337453 |
Target: 5'- aGGCCGACGCCAgcacccagaucgacAGGCUGGagaUCAUg -3' miRNA: 3'- gCCGGCUGCGGU--------------UCUGGCCgcgGGUG- -5' |
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18506 | 3' | -63.2 | NC_004681.1 | + | 22821 | 0.66 | 0.386683 |
Target: 5'- gCGGCCG-UGCCGguguucuGGGUCuGUGCCCACa -3' miRNA: 3'- -GCCGGCuGCGGU-------UCUGGcCGCGGGUG- -5' |
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18506 | 3' | -63.2 | NC_004681.1 | + | 25021 | 0.66 | 0.404398 |
Target: 5'- -aGUCGACGCCGcgcagaAGGgUGGCagcuGCCCACu -3' miRNA: 3'- gcCGGCUGCGGU------UCUgGCCG----CGGGUG- -5' |
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18506 | 3' | -63.2 | NC_004681.1 | + | 11840 | 0.66 | 0.404398 |
Target: 5'- aCGGaCGACaCCAAGAUuuggcagucgCGGCGCgCGCa -3' miRNA: 3'- -GCCgGCUGcGGUUCUG----------GCCGCGgGUG- -5' |
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18506 | 3' | -63.2 | NC_004681.1 | + | 25301 | 0.66 | 0.430574 |
Target: 5'- gCGGUCGcCGCCGuuGCCaGCGCCg-- -3' miRNA: 3'- -GCCGGCuGCGGUucUGGcCGCGGgug -5' |
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18506 | 3' | -63.2 | NC_004681.1 | + | 33475 | 0.66 | 0.387515 |
Target: 5'- uGGCCGugGCUGAucCUGGUGgCCGu -3' miRNA: 3'- gCCGGCugCGGUUcuGGCCGCgGGUg -5' |
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18506 | 3' | -63.2 | NC_004681.1 | + | 35396 | 0.66 | 0.430574 |
Target: 5'- uGGCCGGauuCCucGACgGGCaCCCACu -3' miRNA: 3'- gCCGGCUgc-GGuuCUGgCCGcGGGUG- -5' |
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18506 | 3' | -63.2 | NC_004681.1 | + | 18364 | 0.66 | 0.421737 |
Target: 5'- cCGG-UGGCGCCAucgacauggcAGGCCaggcGGCGgCCGCg -3' miRNA: 3'- -GCCgGCUGCGGU----------UCUGG----CCGCgGGUG- -5' |
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18506 | 3' | -63.2 | NC_004681.1 | + | 40386 | 0.66 | 0.421737 |
Target: 5'- gCGGCac-CGCCAGcguGGCCGGUGUcuCCACc -3' miRNA: 3'- -GCCGgcuGCGGUU---CUGGCCGCG--GGUG- -5' |
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18506 | 3' | -63.2 | NC_004681.1 | + | 47238 | 0.66 | 0.413012 |
Target: 5'- -cGCCGACaaUGAGACCauccGCGCCUACa -3' miRNA: 3'- gcCGGCUGcgGUUCUGGc---CGCGGGUG- -5' |
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18506 | 3' | -63.2 | NC_004681.1 | + | 67697 | 0.66 | 0.413012 |
Target: 5'- uCGGCacCGACGaCAAGggccGCUGGCGCuaCCGCa -3' miRNA: 3'- -GCCG--GCUGCgGUUC----UGGCCGCG--GGUG- -5' |
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18506 | 3' | -63.2 | NC_004681.1 | + | 29158 | 0.66 | 0.413012 |
Target: 5'- aCGGCC-ACGUCAAcGACCaaccccugGGCGgCCAUc -3' miRNA: 3'- -GCCGGcUGCGGUU-CUGG--------CCGCgGGUG- -5' |
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18506 | 3' | -63.2 | NC_004681.1 | + | 61121 | 0.66 | 0.413012 |
Target: 5'- aGGCCGuCGCCAAcuucACCGucGUGUCCAa -3' miRNA: 3'- gCCGGCuGCGGUUc---UGGC--CGCGGGUg -5' |
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18506 | 3' | -63.2 | NC_004681.1 | + | 426 | 0.66 | 0.412145 |
Target: 5'- cCGGUgGACGaCgAGGGCCuccgcugGGCGUCCAa -3' miRNA: 3'- -GCCGgCUGC-GgUUCUGG-------CCGCGGGUg -5' |
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18506 | 3' | -63.2 | NC_004681.1 | + | 65967 | 0.66 | 0.404398 |
Target: 5'- aCGGCaCGAagGCCGAGAa-GGCuGCCgCGCa -3' miRNA: 3'- -GCCG-GCUg-CGGUUCUggCCG-CGG-GUG- -5' |
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18506 | 3' | -63.2 | NC_004681.1 | + | 7826 | 0.66 | 0.404398 |
Target: 5'- aGGCCGgaACGCCAcaAGAuucaaCCGaagaauCGCCCGCu -3' miRNA: 3'- gCCGGC--UGCGGU--UCU-----GGCc-----GCGGGUG- -5' |
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18506 | 3' | -63.2 | NC_004681.1 | + | 41056 | 0.66 | 0.395898 |
Target: 5'- aCGGCCcucuucGGCGCCGccGCCGauGUGCUCACc -3' miRNA: 3'- -GCCGG------CUGCGGUucUGGC--CGCGGGUG- -5' |
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18506 | 3' | -63.2 | NC_004681.1 | + | 14572 | 0.66 | 0.395898 |
Target: 5'- aCGGCCGcaguCGCCuucGGcACCGGCaaGCUgGCu -3' miRNA: 3'- -GCCGGCu---GCGGu--UC-UGGCCG--CGGgUG- -5' |
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18506 | 3' | -63.2 | NC_004681.1 | + | 27055 | 0.66 | 0.390854 |
Target: 5'- uGGUCGGCGUCGAGGgaccuacaaccaacuCCGGUcuuggcaccGUCCACu -3' miRNA: 3'- gCCGGCUGCGGUUCU---------------GGCCG---------CGGGUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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